We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSOX13
(GeneCards)
ModelSOX13_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length8
Quality
D
Motif rank
0
ConsensusnATTGTKn
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words5
TF familySOX-related factors {4.1.1}
TF subfamilyGroup D {4.1.1.4}
HGNCHGNC:11192
EntrezGeneGeneID:9580
(SSTAR profile)
UniProt IDSOX13_HUMAN
UniProt ACQ9UN79
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.296984999999999
0.0005 5.785195
0.0001 6.44116
GTEx tissue expression atlas SOX13 expression
ReMap ChIP-seq dataset list SOX13 datasets
Motifs in JASPAR
PCM
ACGT
010.8041.8750.8041.518
023.9290.00.01.071
030.00.00.05.0
040.00.00.05.0
051.0710.03.9290.0
060.00.00.05.0
070.00.7141.0713.214
080.8041.8750.8041.518
PWM
ACGT
01-0.3150.321-0.3150.15
020.964-1.413-1.413-0.114
03-1.413-1.413-1.4131.185
04-1.413-1.413-1.4131.185
05-0.114-1.4130.964-1.413
06-1.413-1.413-1.4131.185
07-1.413-0.392-0.1140.783
08-0.3150.321-0.3150.15