Model info
| Transcription factor | Sox13 | ||||||||
| Model | SOX13_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 8 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nATTGTKn | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 5 | ||||||||
| TF family | SOX-related factors {4.1.1} | ||||||||
| TF subfamily | Group D {4.1.1.4} | ||||||||
| MGI | MGI:98361 | ||||||||
| EntrezGene | GeneID:20668 (SSTAR profile) | ||||||||
| UniProt ID | SOX13_MOUSE | ||||||||
| UniProt AC | Q04891 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Sox13 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.804 | 1.875 | 0.804 | 1.518 |
| 02 | 3.929 | 0.0 | 0.0 | 1.071 |
| 03 | 0.0 | 0.0 | 0.0 | 5.0 |
| 04 | 0.0 | 0.0 | 0.0 | 5.0 |
| 05 | 1.071 | 0.0 | 3.929 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 5.0 |
| 07 | 0.0 | 0.714 | 1.071 | 3.214 |
| 08 | 0.804 | 1.875 | 0.804 | 1.518 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.315 | 0.321 | -0.315 | 0.15 |
| 02 | 0.964 | -1.413 | -1.413 | -0.114 |
| 03 | -1.413 | -1.413 | -1.413 | 1.185 |
| 04 | -1.413 | -1.413 | -1.413 | 1.185 |
| 05 | -0.114 | -1.413 | 0.964 | -1.413 |
| 06 | -1.413 | -1.413 | -1.413 | 1.185 |
| 07 | -1.413 | -0.392 | -0.114 | 0.783 |
| 08 | -0.315 | 0.321 | -0.315 | 0.15 |