Model info
| Transcription factor | Sox15 | ||||||||
| Model | SOX15_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 7 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | CWTTGTT | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 8 | ||||||||
| TF family | SOX-related factors {4.1.1} | ||||||||
| TF subfamily | Group G {4.1.1.7} | ||||||||
| MGI | MGI:98363 | ||||||||
| EntrezGene | GeneID:20670 (SSTAR profile) | ||||||||
| UniProt ID | SOX15_MOUSE | ||||||||
| UniProt AC | P43267 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Sox15 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.0 | 8.0 | 0.0 | 0.0 |
| 02 | 4.114 | 1.029 | 0.0 | 2.857 |
| 03 | 0.0 | 0.0 | 0.0 | 8.0 |
| 04 | 0.0 | 0.0 | 0.0 | 8.0 |
| 05 | 0.0 | 0.0 | 8.0 | 0.0 |
| 06 | 0.0 | 0.0 | 1.029 | 6.971 |
| 07 | 1.171 | 0.257 | 0.257 | 6.314 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.578 | 1.218 | -1.578 | -1.578 |
| 02 | 0.609 | -0.487 | -1.578 | 0.293 |
| 03 | -1.578 | -1.578 | -1.578 | 1.218 |
| 04 | -1.578 | -1.578 | -1.578 | 1.218 |
| 05 | -1.578 | -1.578 | 1.218 | -1.578 |
| 06 | -1.578 | -1.578 | -0.487 | 1.09 |
| 07 | -0.399 | -1.177 | -1.177 | 0.998 |