We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSOX17
(GeneCards)
ModelSOX17_HUMAN.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
C
Motif rank
0
ConsensusbvnbCCATYKTdn
Best auROC (human)0.856
Best auROC (mouse)
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)
Aligned words510
TF familySOX-related factors {4.1.1}
TF subfamilyGroup F {4.1.1.6}
HGNCHGNC:18122
EntrezGeneGeneID:64321
(SSTAR profile)
UniProt IDSOX17_HUMAN
UniProt ACQ9H6I2
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.64427
0.0005 12.30541
0.0001 15.546800000000001
GTEx tissue expression atlas SOX17 expression
ReMap ChIP-seq dataset list SOX17 datasets
Motifs in JASPAR
MA0078.1 (Sox17; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0130.022.027.05.037.040.03.023.036.0126.033.020.011.034.030.023.0
0218.023.041.032.060.0100.027.035.024.035.024.010.09.021.022.019.0
0313.029.056.013.017.028.0113.021.05.040.049.020.09.021.024.042.0
043.030.06.05.011.090.02.015.05.0222.09.06.01.069.012.014.0
050.015.02.03.014.0316.03.078.00.029.00.00.01.023.04.012.0
0615.00.00.00.0372.00.02.09.09.00.00.00.086.01.01.05.0
070.01.08.0473.00.00.00.01.00.00.00.03.00.00.02.012.0
080.00.00.00.00.00.00.01.00.02.00.08.04.0100.041.0344.0
091.00.00.03.00.02.04.096.02.02.05.032.01.012.0270.070.0
100.01.00.03.00.00.00.016.02.03.03.0271.01.07.05.0188.0
111.00.02.00.01.02.04.04.05.00.01.02.055.050.0135.0238.0
1213.05.010.034.010.017.04.021.026.020.059.037.030.092.055.067.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.04-0.346-0.144-1.770.1670.244-2.234-0.3020.141.3850.054-0.439-1.0220.083-0.04-0.302
02-0.543-0.3020.2690.0230.6461.155-0.1440.112-0.260.112-0.26-1.114-1.215-0.392-0.346-0.49
03-0.86-0.0740.578-0.86-0.599-0.1081.276-0.392-1.770.2440.445-0.439-1.215-0.392-0.260.293
04-2.234-0.04-1.6-1.77-1.0221.05-2.584-0.721-1.771.95-1.215-1.6-3.1260.785-0.938-0.788
05-4.4-0.721-2.584-2.234-0.7882.303-2.2340.907-4.4-0.074-4.4-4.4-3.126-0.302-1.975-0.938
06-0.721-4.4-4.4-4.42.466-4.4-2.584-1.215-1.215-4.4-4.4-4.41.004-3.126-3.126-1.77
07-4.4-3.126-1.3282.706-4.4-4.4-4.4-3.126-4.4-4.4-4.4-2.234-4.4-4.4-2.584-0.938
08-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.4-2.584-4.4-1.328-1.9751.1550.2692.387
09-3.126-4.4-4.4-2.234-4.4-2.584-1.9751.114-2.584-2.584-1.770.023-3.126-0.9382.1450.8
10-4.4-3.126-4.4-2.234-4.4-4.4-4.4-0.658-2.584-2.234-2.2342.149-3.126-1.454-1.771.784
11-3.126-4.4-2.584-4.4-3.126-2.584-1.975-1.975-1.77-4.4-3.126-2.5840.560.4651.4542.02
12-0.86-1.77-1.1140.083-1.114-0.599-1.975-0.392-0.181-0.4390.630.167-0.041.0720.560.756