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Model info
Transcription factorSOX17
(GeneCards)
ModelSOX17_HUMAN.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
C
Motif rank
0
ConsensusbvnbCCATYKTdn
Best auROC (human)0.856
Best auROC (mouse)
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)
Aligned words510
TF familySOX-related factors {4.1.1}
TF subfamilyGroup F {4.1.1.6}
HGNCHGNC:18122
EntrezGeneGeneID:64321
(SSTAR profile)
UniProt IDSOX17_HUMAN
UniProt ACQ9H6I2
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.64427
0.0005 12.30541
0.0001 15.546800000000001
GTEx tissue expression atlas SOX17 expression
ReMap ChIP-seq dataset list SOX17 datasets
Motifs in JASPAR
MA0078.1 (Sox17; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0130.022.027.05.037.040.03.023.036.0126.033.020.011.034.030.023.0
0218.023.041.032.060.0100.027.035.024.035.024.010.09.021.022.019.0
0313.029.056.013.017.028.0113.021.05.040.049.020.09.021.024.042.0
043.030.06.05.011.090.02.015.05.0222.09.06.01.069.012.014.0
050.015.02.03.014.0316.03.078.00.029.00.00.01.023.04.012.0
0615.00.00.00.0372.00.02.09.09.00.00.00.086.01.01.05.0
070.01.08.0473.00.00.00.01.00.00.00.03.00.00.02.012.0
080.00.00.00.00.00.00.01.00.02.00.08.04.0100.041.0344.0
091.00.00.03.00.02.04.096.02.02.05.032.01.012.0270.070.0
100.01.00.03.00.00.00.016.02.03.03.0271.01.07.05.0188.0
111.00.02.00.01.02.04.04.05.00.01.02.055.050.0135.0238.0
1213.05.010.034.010.017.04.021.026.020.059.037.030.092.055.067.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.04-0.346-0.144-1.770.1670.244-2.234-0.3020.141.3850.054-0.439-1.0220.083-0.04-0.302
02-0.543-0.3020.2690.0230.6461.155-0.1440.112-0.260.112-0.26-1.114-1.215-0.392-0.346-0.49
03-0.86-0.0740.578-0.86-0.599-0.1081.276-0.392-1.770.2440.445-0.439-1.215-0.392-0.260.293
04-2.234-0.04-1.6-1.77-1.0221.05-2.584-0.721-1.771.95-1.215-1.6-3.1260.785-0.938-0.788
05-4.4-0.721-2.584-2.234-0.7882.303-2.2340.907-4.4-0.074-4.4-4.4-3.126-0.302-1.975-0.938
06-0.721-4.4-4.4-4.42.466-4.4-2.584-1.215-1.215-4.4-4.4-4.41.004-3.126-3.126-1.77
07-4.4-3.126-1.3282.706-4.4-4.4-4.4-3.126-4.4-4.4-4.4-2.234-4.4-4.4-2.584-0.938
08-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.4-2.584-4.4-1.328-1.9751.1550.2692.387
09-3.126-4.4-4.4-2.234-4.4-2.584-1.9751.114-2.584-2.584-1.770.023-3.126-0.9382.1450.8
10-4.4-3.126-4.4-2.234-4.4-4.4-4.4-0.658-2.584-2.234-2.2342.149-3.126-1.454-1.771.784
11-3.126-4.4-2.584-4.4-3.126-2.584-1.975-1.975-1.77-4.4-3.126-2.5840.560.4651.4542.02
12-0.86-1.77-1.1140.083-1.114-0.599-1.975-0.392-0.181-0.4390.630.167-0.041.0720.560.756