We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSOX17
(GeneCards)
ModelSOX17_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
C
Motif rank
0
ConsensusbCCATYKTbbb
Best auROC (human)0.835
Best auROC (mouse)
Peak sets in benchmark (human)4
Peak sets in benchmark (mouse)
Aligned words500
TF familySOX-related factors {4.1.1}
TF subfamilyGroup F {4.1.1.6}
HGNCHGNC:18122
EntrezGeneGeneID:64321
(SSTAR profile)
UniProt IDSOX17_HUMAN
UniProt ACQ9H6I2
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.648465
0.0005 6.38035
0.0001 7.8887599999999996
GTEx tissue expression atlas SOX17 expression
ReMap ChIP-seq dataset list SOX17 datasets
Motifs in JASPAR
PCM
ACGT
0157.0142.0213.088.0
0216.0403.046.035.0
0320.0400.02.078.0
04444.08.02.046.0
052.010.05.0483.0
064.059.056.0381.0
0711.2533.25310.25145.25
0814.2511.257.25467.25
0967.2568.25138.25226.25
1037.25145.25114.25203.25
1165.25118.2598.25218.25
PWM
ACGT
01-0.7710.1260.528-0.346
02-1.9751.162-0.979-1.242
03-1.771.155-3.573-0.464
041.259-2.584-3.573-0.979
05-3.573-2.394-2.9611.343
06-3.126-0.737-0.7881.106
07-2.291-1.2910.9020.148
08-2.08-2.291-2.6651.31
09-0.609-0.5950.10.588
10-1.1820.148-0.0890.481
11-0.639-0.055-0.2370.552