Model info
| Transcription factor | Sox17 | ||||||||
| Model | SOX17_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bCCATYKTbbb | ||||||||
| Best auROC (human) | 0.835 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 4 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 500 | ||||||||
| TF family | SOX-related factors {4.1.1} | ||||||||
| TF subfamily | Group F {4.1.1.6} | ||||||||
| MGI | MGI:107543 | ||||||||
| EntrezGene | GeneID:20671 (SSTAR profile) | ||||||||
| UniProt ID | SOX17_MOUSE | ||||||||
| UniProt AC | Q61473 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Sox17 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 57.0 | 142.0 | 213.0 | 88.0 |
| 02 | 16.0 | 403.0 | 46.0 | 35.0 |
| 03 | 20.0 | 400.0 | 2.0 | 78.0 |
| 04 | 444.0 | 8.0 | 2.0 | 46.0 |
| 05 | 2.0 | 10.0 | 5.0 | 483.0 |
| 06 | 4.0 | 59.0 | 56.0 | 381.0 |
| 07 | 11.25 | 33.25 | 310.25 | 145.25 |
| 08 | 14.25 | 11.25 | 7.25 | 467.25 |
| 09 | 67.25 | 68.25 | 138.25 | 226.25 |
| 10 | 37.25 | 145.25 | 114.25 | 203.25 |
| 11 | 65.25 | 118.25 | 98.25 | 218.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.771 | 0.126 | 0.528 | -0.346 |
| 02 | -1.975 | 1.162 | -0.979 | -1.242 |
| 03 | -1.77 | 1.155 | -3.573 | -0.464 |
| 04 | 1.259 | -2.584 | -3.573 | -0.979 |
| 05 | -3.573 | -2.394 | -2.961 | 1.343 |
| 06 | -3.126 | -0.737 | -0.788 | 1.106 |
| 07 | -2.291 | -1.291 | 0.902 | 0.148 |
| 08 | -2.08 | -2.291 | -2.665 | 1.31 |
| 09 | -0.609 | -0.595 | 0.1 | 0.588 |
| 10 | -1.182 | 0.148 | -0.089 | 0.481 |
| 11 | -0.639 | -0.055 | -0.237 | 0.552 |