Transcription factor | SOX18 (GeneCards) | ||||||||
Model | SOX18_HUMAN.H11MO.0.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | Integrative | ||||||||
Model release | HOCOMOCOv9 | ||||||||
Model length | 19 | ||||||||
Quality | D | ||||||||
Motif rank | 0 | ||||||||
Consensus | SMWhnMATTGTYbWnnYYC | ||||||||
Best auROC (human) | |||||||||
Best auROC (mouse) | |||||||||
Peak sets in benchmark (human) | |||||||||
Peak sets in benchmark (mouse) | |||||||||
Aligned words | 8 | ||||||||
TF family | SOX-related factors {4.1.1} | ||||||||
TF subfamily | Group F {4.1.1.6} | ||||||||
HGNC | HGNC:11194 | ||||||||
EntrezGene | GeneID:54345 (SSTAR profile) | ||||||||
UniProt ID | SOX18_HUMAN | ||||||||
UniProt AC | P35713 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | SOX18 expression | ||||||||
ReMap ChIP-seq dataset list | SOX18 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 1.233 | 2.219 | 4.301 | 0.247 |
02 | 3.068 | 2.959 | 0.0 | 1.973 |
03 | 4.055 | 0.0 | 0.986 | 2.959 |
04 | 2.082 | 2.959 | 0.986 | 1.973 |
05 | 1.973 | 3.068 | 1.973 | 0.986 |
06 | 3.068 | 3.945 | 0.986 | 0.0 |
07 | 5.041 | 0.0 | 0.0 | 2.959 |
08 | 0.0 | 0.0 | 0.0 | 8.0 |
09 | 0.0 | 0.0 | 0.0 | 8.0 |
10 | 0.0 | 0.0 | 8.0 | 0.0 |
11 | 1.973 | 0.0 | 0.0 | 6.027 |
12 | 0.986 | 2.082 | 0.0 | 4.932 |
13 | 0.986 | 2.959 | 1.973 | 2.082 |
14 | 1.973 | 0.986 | 0.0 | 5.041 |
15 | 0.986 | 2.959 | 0.986 | 3.068 |
16 | 0.986 | 0.986 | 2.959 | 3.068 |
17 | 0.0 | 1.973 | 0.986 | 5.041 |
18 | 0.0 | 5.041 | 0.986 | 1.973 |
19 | 0.521 | 6.438 | 0.521 | 0.521 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.363 | 0.083 | 0.649 | -1.19 |
02 | 0.353 | 0.322 | -1.578 | -0.011 |
03 | 0.596 | -1.578 | -0.515 | 0.322 |
04 | 0.032 | 0.322 | -0.515 | -0.011 |
05 | -0.011 | 0.353 | -0.011 | -0.515 |
06 | 0.353 | 0.572 | -0.515 | -1.578 |
07 | 0.792 | -1.578 | -1.578 | 0.322 |
08 | -1.578 | -1.578 | -1.578 | 1.218 |
09 | -1.578 | -1.578 | -1.578 | 1.218 |
10 | -1.578 | -1.578 | 1.218 | -1.578 |
11 | -0.011 | -1.578 | -1.578 | 0.955 |
12 | -0.515 | 0.032 | -1.578 | 0.772 |
13 | -0.515 | 0.322 | -0.011 | 0.032 |
14 | -0.011 | -0.515 | -1.578 | 0.792 |
15 | -0.515 | 0.322 | -0.515 | 0.353 |
16 | -0.515 | -0.515 | 0.322 | 0.353 |
17 | -1.578 | -0.011 | -0.515 | 0.792 |
18 | -1.578 | 0.792 | -0.515 | -0.011 |
19 | -0.885 | 1.016 | -0.885 | -0.885 |