Model info
| Transcription factor | Sox18 | ||||||||
| Model | SOX18_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 19 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | SMWhnMATTGTYbWnnYYC | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 8 | ||||||||
| TF family | SOX-related factors {4.1.1} | ||||||||
| TF subfamily | Group F {4.1.1.6} | ||||||||
| MGI | MGI:103559 | ||||||||
| EntrezGene | GeneID:20672 (SSTAR profile) | ||||||||
| UniProt ID | SOX18_MOUSE | ||||||||
| UniProt AC | P43680 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Sox18 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.233 | 2.219 | 4.301 | 0.247 |
| 02 | 3.068 | 2.959 | 0.0 | 1.973 |
| 03 | 4.055 | 0.0 | 0.986 | 2.959 |
| 04 | 2.082 | 2.959 | 0.986 | 1.973 |
| 05 | 1.973 | 3.068 | 1.973 | 0.986 |
| 06 | 3.068 | 3.945 | 0.986 | 0.0 |
| 07 | 5.041 | 0.0 | 0.0 | 2.959 |
| 08 | 0.0 | 0.0 | 0.0 | 8.0 |
| 09 | 0.0 | 0.0 | 0.0 | 8.0 |
| 10 | 0.0 | 0.0 | 8.0 | 0.0 |
| 11 | 1.973 | 0.0 | 0.0 | 6.027 |
| 12 | 0.986 | 2.082 | 0.0 | 4.932 |
| 13 | 0.986 | 2.959 | 1.973 | 2.082 |
| 14 | 1.973 | 0.986 | 0.0 | 5.041 |
| 15 | 0.986 | 2.959 | 0.986 | 3.068 |
| 16 | 0.986 | 0.986 | 2.959 | 3.068 |
| 17 | 0.0 | 1.973 | 0.986 | 5.041 |
| 18 | 0.0 | 5.041 | 0.986 | 1.973 |
| 19 | 0.521 | 6.438 | 0.521 | 0.521 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.363 | 0.083 | 0.649 | -1.19 |
| 02 | 0.353 | 0.322 | -1.578 | -0.011 |
| 03 | 0.596 | -1.578 | -0.515 | 0.322 |
| 04 | 0.032 | 0.322 | -0.515 | -0.011 |
| 05 | -0.011 | 0.353 | -0.011 | -0.515 |
| 06 | 0.353 | 0.572 | -0.515 | -1.578 |
| 07 | 0.792 | -1.578 | -1.578 | 0.322 |
| 08 | -1.578 | -1.578 | -1.578 | 1.218 |
| 09 | -1.578 | -1.578 | -1.578 | 1.218 |
| 10 | -1.578 | -1.578 | 1.218 | -1.578 |
| 11 | -0.011 | -1.578 | -1.578 | 0.955 |
| 12 | -0.515 | 0.032 | -1.578 | 0.772 |
| 13 | -0.515 | 0.322 | -0.011 | 0.032 |
| 14 | -0.011 | -0.515 | -1.578 | 0.792 |
| 15 | -0.515 | 0.322 | -0.515 | 0.353 |
| 16 | -0.515 | -0.515 | 0.322 | 0.353 |
| 17 | -1.578 | -0.011 | -0.515 | 0.792 |
| 18 | -1.578 | 0.792 | -0.515 | -0.011 |
| 19 | -0.885 | 1.016 | -0.885 | -0.885 |