Model info
| Transcription factor | SOX1 (GeneCards) | ||||||||
| Model | SOX1_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 16 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dRTSAATGKTATTCAK | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 40 | ||||||||
| TF family | SOX-related factors {4.1.1} | ||||||||
| TF subfamily | Group B {4.1.1.2} | ||||||||
| HGNC | HGNC:11189 | ||||||||
| EntrezGene | GeneID:6656 (SSTAR profile) | ||||||||
| UniProt ID | SOX1_HUMAN | ||||||||
| UniProt AC | O00570 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SOX1 expression | ||||||||
| ReMap ChIP-seq dataset list | SOX1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 12.0 | 4.0 | 14.0 | 10.0 |
| 02 | 26.75 | 4.75 | 7.75 | 0.75 |
| 03 | 11.25 | 0.25 | 0.25 | 28.25 |
| 04 | 1.25 | 13.25 | 25.25 | 0.25 |
| 05 | 40.0 | 0.0 | 0.0 | 0.0 |
| 06 | 38.0 | 0.0 | 1.0 | 1.0 |
| 07 | 0.0 | 0.0 | 1.0 | 39.0 |
| 08 | 0.0 | 1.0 | 36.0 | 3.0 |
| 09 | 0.0 | 1.0 | 12.0 | 27.0 |
| 10 | 2.0 | 5.0 | 1.0 | 32.0 |
| 11 | 40.0 | 0.0 | 0.0 | 0.0 |
| 12 | 0.0 | 0.0 | 6.0 | 34.0 |
| 13 | 0.0 | 0.0 | 1.0 | 39.0 |
| 14 | 0.0 | 25.0 | 15.0 | 0.0 |
| 15 | 30.0 | 0.0 | 0.0 | 10.0 |
| 16 | 1.75 | 3.75 | 7.75 | 26.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.168 | -0.797 | 0.312 | 0.0 |
| 02 | 0.93 | -0.655 | -0.231 | -1.877 |
| 03 | 0.108 | -2.232 | -2.232 | 0.982 |
| 04 | -1.615 | 0.26 | 0.874 | -2.232 |
| 05 | 1.321 | -2.472 | -2.472 | -2.472 |
| 06 | 1.271 | -2.472 | -1.737 | -1.737 |
| 07 | -2.472 | -2.472 | -1.737 | 1.296 |
| 08 | -2.472 | -1.737 | 1.218 | -1.024 |
| 09 | -2.472 | -1.737 | 0.168 | 0.939 |
| 10 | -1.318 | -0.612 | -1.737 | 1.103 |
| 11 | 1.321 | -2.472 | -2.472 | -2.472 |
| 12 | -2.472 | -2.472 | -0.456 | 1.162 |
| 13 | -2.472 | -2.472 | -1.737 | 1.296 |
| 14 | -2.472 | 0.864 | 0.377 | -2.472 |
| 15 | 1.041 | -2.472 | -2.472 | 0.0 |
| 16 | -1.408 | -0.849 | -0.231 | 0.93 |