We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSOX1
(GeneCards)
ModelSOX1_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length16
Quality
D
Motif rank
0
ConsensusdRTSAATGKTATTCAK
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words40
TF familySOX-related factors {4.1.1}
TF subfamilyGroup B {4.1.1.2}
HGNCHGNC:11189
EntrezGeneGeneID:6656
(SSTAR profile)
UniProt IDSOX1_HUMAN
UniProt ACO00570
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.2958099999999995
0.0005 5.39706
0.0001 7.706710000000001
GTEx tissue expression atlas SOX1 expression
ReMap ChIP-seq dataset list SOX1 datasets
Motifs in JASPAR
PCM
ACGT
0112.04.014.010.0
0226.754.757.750.75
0311.250.250.2528.25
041.2513.2525.250.25
0540.00.00.00.0
0638.00.01.01.0
070.00.01.039.0
080.01.036.03.0
090.01.012.027.0
102.05.01.032.0
1140.00.00.00.0
120.00.06.034.0
130.00.01.039.0
140.025.015.00.0
1530.00.00.010.0
161.753.757.7526.75
PWM
ACGT
010.168-0.7970.3120.0
020.93-0.655-0.231-1.877
030.108-2.232-2.2320.982
04-1.6150.260.874-2.232
051.321-2.472-2.472-2.472
061.271-2.472-1.737-1.737
07-2.472-2.472-1.7371.296
08-2.472-1.7371.218-1.024
09-2.472-1.7370.1680.939
10-1.318-0.612-1.7371.103
111.321-2.472-2.472-2.472
12-2.472-2.472-0.4561.162
13-2.472-2.472-1.7371.296
14-2.4720.8640.377-2.472
151.041-2.472-2.4720.0
16-1.408-0.849-0.2310.93