Model info
| Transcription factor | SOX21 (GeneCards) | ||||||||
| Model | SOX21_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 16 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dRWSAATGdYAKTSWb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 14076 | ||||||||
| TF family | SOX-related factors {4.1.1} | ||||||||
| TF subfamily | Group B {4.1.1.2} | ||||||||
| HGNC | HGNC:11197 | ||||||||
| EntrezGene | GeneID:11166 (SSTAR profile) | ||||||||
| UniProt ID | SOX21_HUMAN | ||||||||
| UniProt AC | Q9Y651 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SOX21 expression | ||||||||
| ReMap ChIP-seq dataset list | SOX21 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 5083.75 | 1851.75 | 4821.75 | 2318.75 |
| 02 | 8487.75 | 1840.75 | 2416.75 | 1330.75 |
| 03 | 8335.5 | 481.5 | 1636.5 | 3622.5 |
| 04 | 400.25 | 9859.25 | 2904.25 | 912.25 |
| 05 | 13806.75 | 26.75 | 190.75 | 51.75 |
| 06 | 13642.5 | 11.5 | 155.5 | 266.5 |
| 07 | 37.25 | 23.25 | 235.25 | 13780.25 |
| 08 | 57.5 | 20.5 | 10298.5 | 3699.5 |
| 09 | 1364.25 | 1050.25 | 6320.25 | 5341.25 |
| 10 | 440.0 | 4920.0 | 219.0 | 8497.0 |
| 11 | 13579.75 | 111.75 | 265.75 | 118.75 |
| 12 | 212.25 | 124.25 | 5829.25 | 7910.25 |
| 13 | 252.25 | 150.25 | 340.25 | 13333.25 |
| 14 | 1010.75 | 2775.75 | 9902.75 | 386.75 |
| 15 | 3699.5 | 276.5 | 558.5 | 9541.5 |
| 16 | 1503.0 | 2576.0 | 2807.0 | 7190.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.368 | -0.641 | 0.315 | -0.417 |
| 02 | 0.88 | -0.647 | -0.375 | -0.971 |
| 03 | 0.862 | -1.985 | -0.765 | 0.029 |
| 04 | -2.169 | 1.03 | -0.192 | -1.348 |
| 05 | 1.366 | -4.795 | -2.903 | -4.175 |
| 06 | 1.355 | -5.536 | -3.105 | -2.572 |
| 07 | -4.487 | -4.923 | -2.696 | 1.365 |
| 08 | -4.074 | -5.036 | 1.073 | 0.05 |
| 09 | -0.947 | -1.208 | 0.585 | 0.417 |
| 10 | -2.074 | 0.335 | -2.767 | 0.881 |
| 11 | 1.35 | -3.429 | -2.575 | -3.37 |
| 12 | -2.798 | -3.325 | 0.504 | 0.81 |
| 13 | -2.627 | -3.139 | -2.33 | 1.332 |
| 14 | -1.246 | -0.237 | 1.034 | -2.203 |
| 15 | 0.05 | -2.536 | -1.837 | 0.997 |
| 16 | -0.85 | -0.312 | -0.226 | 0.714 |