We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSOX21
(GeneCards)
ModelSOX21_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length16
Quality
D
Motif rank
0
ConsensusdRWSAATGdYAKTSWb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words14076
TF familySOX-related factors {4.1.1}
TF subfamilyGroup B {4.1.1.2}
HGNCHGNC:11197
EntrezGeneGeneID:11166
(SSTAR profile)
UniProt IDSOX21_HUMAN
UniProt ACQ9Y651
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.9431599999999998
0.0005 5.18576
0.0001 7.737410000000001
GTEx tissue expression atlas SOX21 expression
ReMap ChIP-seq dataset list SOX21 datasets
Motifs in JASPAR
PCM
ACGT
015083.751851.754821.752318.75
028487.751840.752416.751330.75
038335.5481.51636.53622.5
04400.259859.252904.25912.25
0513806.7526.75190.7551.75
0613642.511.5155.5266.5
0737.2523.25235.2513780.25
0857.520.510298.53699.5
091364.251050.256320.255341.25
10440.04920.0219.08497.0
1113579.75111.75265.75118.75
12212.25124.255829.257910.25
13252.25150.25340.2513333.25
141010.752775.759902.75386.75
153699.5276.5558.59541.5
161503.02576.02807.07190.0
PWM
ACGT
010.368-0.6410.315-0.417
020.88-0.647-0.375-0.971
030.862-1.985-0.7650.029
04-2.1691.03-0.192-1.348
051.366-4.795-2.903-4.175
061.355-5.536-3.105-2.572
07-4.487-4.923-2.6961.365
08-4.074-5.0361.0730.05
09-0.947-1.2080.5850.417
10-2.0740.335-2.7670.881
111.35-3.429-2.575-3.37
12-2.798-3.3250.5040.81
13-2.627-3.139-2.331.332
14-1.246-0.2371.034-2.203
150.05-2.536-1.8370.997
16-0.85-0.312-0.2260.714