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Model info
Transcription factorSOX2
(GeneCards)
ModelSOX2_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
A
Motif rank
0
ConsensusnbYYWTTSTbhYbbhddh
Best auROC (human)0.975
Best auROC (mouse)0.974
Peak sets in benchmark (human)67
Peak sets in benchmark (mouse)109
Aligned words388
TF familySOX-related factors {4.1.1}
TF subfamilyGroup B {4.1.1.2}
HGNCHGNC:11195
EntrezGeneGeneID:6657
(SSTAR profile)
UniProt IDSOX2_HUMAN
UniProt ACP48431
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.29786
0.0005 12.865260000000001
0.0001 16.08506
GTEx tissue expression atlas SOX2 expression
ReMap ChIP-seq dataset list SOX2 datasets
Motifs in JASPAR
MA0142.1 (Pou5f1::Sox2; Mus musculus)
MA0143.1 (Sox2; Mus musculus)
MA0143.2 (Sox2; Mus musculus)
MA0143.3 (Sox2; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0117.012.032.022.011.032.08.036.04.036.034.019.04.035.040.046.0
021.020.013.02.04.074.04.033.02.078.018.016.05.067.022.029.0
031.09.01.01.015.0130.01.093.02.039.05.011.04.057.05.014.0
0415.01.01.05.0119.05.01.0110.09.00.00.03.049.04.03.063.0
051.04.06.0181.00.00.00.010.00.01.00.04.00.03.01.0177.0
060.00.00.01.00.01.00.07.01.00.00.06.013.00.04.0355.0
071.03.09.01.00.01.00.00.01.02.00.01.022.066.0276.05.0
082.02.00.020.037.01.00.034.026.03.03.0253.02.01.00.04.0
0917.09.014.027.02.02.00.03.01.00.02.00.024.075.042.0170.0
1036.01.03.04.039.029.00.018.028.010.013.07.095.063.024.018.0
118.012.018.0160.09.035.02.057.03.013.06.018.04.05.014.024.0
127.02.010.05.013.022.02.028.05.09.010.016.06.024.0187.042.0
135.04.013.09.012.026.05.014.013.0149.024.023.09.040.017.025.0
1416.06.012.05.0146.022.04.047.025.020.07.07.021.09.014.027.0
15103.011.059.035.025.012.02.018.010.03.010.014.030.012.021.023.0
16127.012.012.017.014.011.01.012.052.011.024.05.026.013.030.021.0
1745.022.028.0124.020.09.01.017.017.018.016.016.03.016.08.028.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.349-0.6880.274-0.096-0.7720.274-1.0790.39-1.7280.390.334-0.24-1.7280.3620.4940.633
02-2.887-0.189-0.61-2.34-1.7281.105-1.7280.304-2.341.158-0.293-0.408-1.5221.007-0.0960.176
03-2.887-0.966-2.887-2.887-0.4711.667-2.8871.333-2.340.469-1.522-0.772-1.7280.846-1.522-0.538
04-0.471-2.887-2.887-1.5221.579-1.522-2.8871.5-0.966-4.191-4.191-1.9880.696-1.728-1.9880.945
05-2.887-1.728-1.3521.997-4.191-4.191-4.191-0.864-4.191-2.887-4.191-1.728-4.191-1.988-2.8871.975
06-4.191-4.191-4.191-2.887-4.191-2.887-4.191-1.206-2.887-4.191-4.191-1.352-0.61-4.191-1.7282.67
07-2.887-1.988-0.966-2.887-4.191-2.887-4.191-4.191-2.887-2.34-4.191-2.887-0.0960.9922.418-1.522
08-2.34-2.34-4.191-0.1890.417-2.887-4.1910.3340.069-1.988-1.9882.331-2.34-2.887-4.191-1.728
09-0.349-0.966-0.5380.106-2.34-2.34-4.191-1.988-2.887-4.191-2.34-4.191-0.011.1190.5431.934
100.39-2.887-1.988-1.7280.4690.176-4.191-0.2930.142-0.864-0.61-1.2061.3540.945-0.01-0.293
11-1.079-0.688-0.2931.874-0.9660.362-2.340.846-1.988-0.61-1.352-0.293-1.728-1.522-0.538-0.01
12-1.206-2.34-0.864-1.522-0.61-0.096-2.340.142-1.522-0.966-0.864-0.408-1.352-0.012.0290.543
13-1.522-1.728-0.61-0.966-0.6880.069-1.522-0.538-0.611.803-0.01-0.052-0.9660.494-0.3490.03
14-0.408-1.352-0.688-1.5221.782-0.096-1.7280.6540.03-0.189-1.206-1.206-0.142-0.966-0.5380.106
151.435-0.7720.880.3620.03-0.688-2.34-0.293-0.864-1.988-0.864-0.5380.21-0.688-0.142-0.052
161.643-0.688-0.688-0.349-0.538-0.772-2.887-0.6880.755-0.772-0.01-1.5220.069-0.610.21-0.142
170.611-0.0960.1421.62-0.189-0.966-2.887-0.349-0.349-0.293-0.408-0.408-1.988-0.408-1.0790.142