We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSOX2
(GeneCards)
ModelSOX2_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
A
Motif rank
0
ConsensusnbYYWTTSTbhYbbhddh
Best auROC (human)0.975
Best auROC (mouse)0.974
Peak sets in benchmark (human)67
Peak sets in benchmark (mouse)109
Aligned words388
TF familySOX-related factors {4.1.1}
TF subfamilyGroup B {4.1.1.2}
HGNCHGNC:11195
EntrezGeneGeneID:6657
(SSTAR profile)
UniProt IDSOX2_HUMAN
UniProt ACP48431
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.29786
0.0005 12.865260000000001
0.0001 16.08506
GTEx tissue expression atlas SOX2 expression
ReMap ChIP-seq dataset list SOX2 datasets
Motifs in JASPAR
MA0142.1 (Pou5f1::Sox2; Mus musculus)
MA0143.1 (Sox2; Mus musculus)
MA0143.2 (Sox2; Mus musculus)
MA0143.3 (Sox2; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0117.012.032.022.011.032.08.036.04.036.034.019.04.035.040.046.0
021.020.013.02.04.074.04.033.02.078.018.016.05.067.022.029.0
031.09.01.01.015.0130.01.093.02.039.05.011.04.057.05.014.0
0415.01.01.05.0119.05.01.0110.09.00.00.03.049.04.03.063.0
051.04.06.0181.00.00.00.010.00.01.00.04.00.03.01.0177.0
060.00.00.01.00.01.00.07.01.00.00.06.013.00.04.0355.0
071.03.09.01.00.01.00.00.01.02.00.01.022.066.0276.05.0
082.02.00.020.037.01.00.034.026.03.03.0253.02.01.00.04.0
0917.09.014.027.02.02.00.03.01.00.02.00.024.075.042.0170.0
1036.01.03.04.039.029.00.018.028.010.013.07.095.063.024.018.0
118.012.018.0160.09.035.02.057.03.013.06.018.04.05.014.024.0
127.02.010.05.013.022.02.028.05.09.010.016.06.024.0187.042.0
135.04.013.09.012.026.05.014.013.0149.024.023.09.040.017.025.0
1416.06.012.05.0146.022.04.047.025.020.07.07.021.09.014.027.0
15103.011.059.035.025.012.02.018.010.03.010.014.030.012.021.023.0
16127.012.012.017.014.011.01.012.052.011.024.05.026.013.030.021.0
1745.022.028.0124.020.09.01.017.017.018.016.016.03.016.08.028.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.349-0.6880.274-0.096-0.7720.274-1.0790.39-1.7280.390.334-0.24-1.7280.3620.4940.633
02-2.887-0.189-0.61-2.34-1.7281.105-1.7280.304-2.341.158-0.293-0.408-1.5221.007-0.0960.176
03-2.887-0.966-2.887-2.887-0.4711.667-2.8871.333-2.340.469-1.522-0.772-1.7280.846-1.522-0.538
04-0.471-2.887-2.887-1.5221.579-1.522-2.8871.5-0.966-4.191-4.191-1.9880.696-1.728-1.9880.945
05-2.887-1.728-1.3521.997-4.191-4.191-4.191-0.864-4.191-2.887-4.191-1.728-4.191-1.988-2.8871.975
06-4.191-4.191-4.191-2.887-4.191-2.887-4.191-1.206-2.887-4.191-4.191-1.352-0.61-4.191-1.7282.67
07-2.887-1.988-0.966-2.887-4.191-2.887-4.191-4.191-2.887-2.34-4.191-2.887-0.0960.9922.418-1.522
08-2.34-2.34-4.191-0.1890.417-2.887-4.1910.3340.069-1.988-1.9882.331-2.34-2.887-4.191-1.728
09-0.349-0.966-0.5380.106-2.34-2.34-4.191-1.988-2.887-4.191-2.34-4.191-0.011.1190.5431.934
100.39-2.887-1.988-1.7280.4690.176-4.191-0.2930.142-0.864-0.61-1.2061.3540.945-0.01-0.293
11-1.079-0.688-0.2931.874-0.9660.362-2.340.846-1.988-0.61-1.352-0.293-1.728-1.522-0.538-0.01
12-1.206-2.34-0.864-1.522-0.61-0.096-2.340.142-1.522-0.966-0.864-0.408-1.352-0.012.0290.543
13-1.522-1.728-0.61-0.966-0.6880.069-1.522-0.538-0.611.803-0.01-0.052-0.9660.494-0.3490.03
14-0.408-1.352-0.688-1.5221.782-0.096-1.7280.6540.03-0.189-1.206-1.206-0.142-0.966-0.5380.106
151.435-0.7720.880.3620.03-0.688-2.34-0.293-0.864-1.988-0.864-0.5380.21-0.688-0.142-0.052
161.643-0.688-0.688-0.349-0.538-0.772-2.887-0.6880.755-0.772-0.01-1.5220.069-0.610.21-0.142
170.611-0.0960.1421.62-0.189-0.966-2.887-0.349-0.349-0.293-0.408-0.408-1.988-0.408-1.0790.142