We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSOX2
(GeneCards)
ModelSOX2_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
1
ConsensusbYYWTTSTbhTKYhdW
Best auROC (human)0.957
Best auROC (mouse)0.955
Peak sets in benchmark (human)67
Peak sets in benchmark (mouse)109
Aligned words500
TF familySOX-related factors {4.1.1}
TF subfamilyGroup B {4.1.1.2}
HGNCHGNC:11195
EntrezGeneGeneID:6657
(SSTAR profile)
UniProt IDSOX2_HUMAN
UniProt ACP48431
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.84431
0.0005 6.71171
0.0001 8.43576
GTEx tissue expression atlas SOX2 expression
ReMap ChIP-seq dataset list SOX2 datasets
Motifs in JASPAR
PCM
ACGT
0139.0136.0134.0191.0
0214.0316.075.095.0
0317.0339.09.0135.0
04191.022.07.0280.0
051.08.03.0488.0
064.00.02.0494.0
0726.0117.0348.09.0
0899.04.09.0388.0
0966.0140.088.0206.0
10254.0100.022.0124.0
1131.030.017.0422.0
128.095.0295.0102.0
1330.0267.053.0150.0
14263.053.048.0136.0
15211.070.0123.096.0
16316.058.031.095.0
PWM
ACGT
01-1.1380.0830.0690.42
02-2.0960.92-0.503-0.271
03-1.920.99-2.4840.076
040.42-1.681-2.6940.8
05-3.903-2.584-3.3251.353
06-3.126-4.4-3.5731.365
07-1.525-0.0651.016-2.484
08-0.23-3.126-2.4841.124
09-0.6280.112-0.3460.495
100.703-0.22-1.681-0.008
11-1.358-1.389-1.921.208
12-2.584-0.2710.852-0.201
13-1.3890.752-0.8410.18
140.737-0.841-0.9380.083
150.519-0.57-0.016-0.26
160.92-0.754-1.358-0.271