We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSox2
ModelSOX2_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusnbSYWTTGTbhWKbhnMhn
Best auROC (human)0.971
Best auROC (mouse)0.976
Peak sets in benchmark (human)67
Peak sets in benchmark (mouse)109
Aligned words512
TF familySOX-related factors {4.1.1}
TF subfamilyGroup B {4.1.1.2}
MGIMGI:98364
EntrezGeneGeneID:20674
(SSTAR profile)
UniProt IDSOX2_MOUSE
UniProt ACP48432
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.38871
0.0005 12.34481
0.0001 16.28326
GTEx tissue expression atlas Sox2 expression
Motifs in JASPAR
MA0142.1 (Pou5f1::Sox2; Mus musculus)
MA0143.1 (Sox2; Mus musculus)
MA0143.2 (Sox2; Mus musculus)
MA0143.3 (Sox2; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0112.017.030.033.011.027.06.074.017.042.046.038.010.025.044.068.0
020.029.011.010.05.085.05.016.09.076.026.015.04.0131.053.025.0
030.014.01.03.013.0180.07.0121.00.060.05.030.02.047.05.012.0
0410.00.00.05.0142.00.00.0159.014.00.00.04.0105.00.02.059.0
050.00.03.0268.00.00.00.00.00.00.00.02.00.00.01.0226.0
060.00.00.00.00.00.00.00.00.00.00.04.04.00.00.0492.0
071.00.03.00.00.00.00.00.00.00.00.00.016.058.0415.07.0
082.01.00.014.028.00.00.030.027.00.03.0388.03.00.00.04.0
0912.08.012.028.00.00.00.01.01.02.00.00.032.0103.059.0242.0
1038.02.00.05.067.022.01.023.040.013.04.014.0123.087.031.030.0
1114.00.03.0251.017.023.04.080.03.03.06.024.05.011.015.041.0
121.07.029.02.06.020.03.08.00.06.019.03.013.028.0286.069.0
131.08.07.04.03.031.02.025.024.0194.043.076.09.035.010.028.0
1412.00.06.019.0159.027.05.077.027.09.014.012.048.019.017.049.0
15149.021.047.029.020.015.03.017.020.05.08.09.091.05.029.032.0
16205.034.029.012.020.015.01.010.054.09.08.016.027.014.022.024.0
1755.042.038.0171.018.023.04.027.023.08.010.019.04.08.019.031.0
1826.017.014.043.020.024.04.033.016.017.021.017.042.040.090.076.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.938-0.599-0.040.054-1.022-0.144-1.60.855-0.5990.2930.3830.193-1.114-0.220.3390.771
02-4.4-0.074-1.022-1.114-1.770.993-1.77-0.658-1.2150.881-0.181-0.721-1.9751.4240.523-0.22
03-4.4-0.788-3.126-2.234-0.861.741-1.4541.345-4.40.646-1.77-0.04-2.5840.404-1.77-0.938
04-1.114-4.4-4.4-1.771.504-4.4-4.41.617-0.788-4.4-4.4-1.9751.203-4.4-2.5840.63
05-4.4-4.4-2.2342.138-4.4-4.4-4.4-4.4-4.4-4.4-4.4-2.584-4.4-4.4-3.1261.968
06-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-1.975-1.975-4.4-4.42.745
07-3.126-4.4-2.234-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-0.6580.6132.575-1.454
08-2.584-3.126-4.4-0.788-0.108-4.4-4.4-0.04-0.144-4.4-2.2342.508-2.234-4.4-4.4-1.975
09-0.938-1.328-0.938-0.108-4.4-4.4-4.4-3.126-3.126-2.584-4.4-4.40.0231.1840.632.036
100.193-2.584-4.4-1.770.756-0.346-3.126-0.3020.244-0.86-1.975-0.7881.3611.016-0.008-0.04
11-0.788-4.4-2.2342.073-0.599-0.302-1.9750.932-2.234-2.234-1.6-0.26-1.77-1.022-0.7210.269
12-3.126-1.454-0.074-2.584-1.6-0.439-2.234-1.328-4.4-1.6-0.49-2.234-0.86-0.1082.2030.785
13-3.126-1.328-1.454-1.975-2.234-0.008-2.584-0.22-0.261.8150.3160.881-1.2150.112-1.114-0.108
14-0.938-4.4-1.6-0.491.617-0.144-1.770.894-0.144-1.215-0.788-0.9380.425-0.49-0.5990.445
151.552-0.3920.404-0.074-0.439-0.721-2.234-0.599-0.439-1.77-1.328-1.2151.061-1.77-0.0740.023
161.8710.083-0.074-0.938-0.439-0.721-3.126-1.1140.542-1.215-1.328-0.658-0.144-0.788-0.346-0.26
170.560.2930.1931.69-0.543-0.302-1.975-0.144-0.302-1.328-1.114-0.49-1.975-1.328-0.49-0.008
18-0.181-0.599-0.7880.316-0.439-0.26-1.9750.054-0.658-0.599-0.392-0.5990.2930.2441.050.881