Transcription factor | Sox2 | ||||||||
Model | SOX2_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 19 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nbSYWTTGTbhWKbhnMhn | ||||||||
Best auROC (human) | 0.971 | ||||||||
Best auROC (mouse) | 0.976 | ||||||||
Peak sets in benchmark (human) | 67 | ||||||||
Peak sets in benchmark (mouse) | 109 | ||||||||
Aligned words | 512 | ||||||||
TF family | SOX-related factors {4.1.1} | ||||||||
TF subfamily | Group B {4.1.1.2} | ||||||||
MGI | MGI:98364 | ||||||||
EntrezGene | GeneID:20674 (SSTAR profile) | ||||||||
UniProt ID | SOX2_MOUSE | ||||||||
UniProt AC | P48432 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Sox2 expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 12.0 | 17.0 | 30.0 | 33.0 | 11.0 | 27.0 | 6.0 | 74.0 | 17.0 | 42.0 | 46.0 | 38.0 | 10.0 | 25.0 | 44.0 | 68.0 |
02 | 0.0 | 29.0 | 11.0 | 10.0 | 5.0 | 85.0 | 5.0 | 16.0 | 9.0 | 76.0 | 26.0 | 15.0 | 4.0 | 131.0 | 53.0 | 25.0 |
03 | 0.0 | 14.0 | 1.0 | 3.0 | 13.0 | 180.0 | 7.0 | 121.0 | 0.0 | 60.0 | 5.0 | 30.0 | 2.0 | 47.0 | 5.0 | 12.0 |
04 | 10.0 | 0.0 | 0.0 | 5.0 | 142.0 | 0.0 | 0.0 | 159.0 | 14.0 | 0.0 | 0.0 | 4.0 | 105.0 | 0.0 | 2.0 | 59.0 |
05 | 0.0 | 0.0 | 3.0 | 268.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 | 1.0 | 226.0 |
06 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 4.0 | 4.0 | 0.0 | 0.0 | 492.0 |
07 | 1.0 | 0.0 | 3.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 16.0 | 58.0 | 415.0 | 7.0 |
08 | 2.0 | 1.0 | 0.0 | 14.0 | 28.0 | 0.0 | 0.0 | 30.0 | 27.0 | 0.0 | 3.0 | 388.0 | 3.0 | 0.0 | 0.0 | 4.0 |
09 | 12.0 | 8.0 | 12.0 | 28.0 | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 2.0 | 0.0 | 0.0 | 32.0 | 103.0 | 59.0 | 242.0 |
10 | 38.0 | 2.0 | 0.0 | 5.0 | 67.0 | 22.0 | 1.0 | 23.0 | 40.0 | 13.0 | 4.0 | 14.0 | 123.0 | 87.0 | 31.0 | 30.0 |
11 | 14.0 | 0.0 | 3.0 | 251.0 | 17.0 | 23.0 | 4.0 | 80.0 | 3.0 | 3.0 | 6.0 | 24.0 | 5.0 | 11.0 | 15.0 | 41.0 |
12 | 1.0 | 7.0 | 29.0 | 2.0 | 6.0 | 20.0 | 3.0 | 8.0 | 0.0 | 6.0 | 19.0 | 3.0 | 13.0 | 28.0 | 286.0 | 69.0 |
13 | 1.0 | 8.0 | 7.0 | 4.0 | 3.0 | 31.0 | 2.0 | 25.0 | 24.0 | 194.0 | 43.0 | 76.0 | 9.0 | 35.0 | 10.0 | 28.0 |
14 | 12.0 | 0.0 | 6.0 | 19.0 | 159.0 | 27.0 | 5.0 | 77.0 | 27.0 | 9.0 | 14.0 | 12.0 | 48.0 | 19.0 | 17.0 | 49.0 |
15 | 149.0 | 21.0 | 47.0 | 29.0 | 20.0 | 15.0 | 3.0 | 17.0 | 20.0 | 5.0 | 8.0 | 9.0 | 91.0 | 5.0 | 29.0 | 32.0 |
16 | 205.0 | 34.0 | 29.0 | 12.0 | 20.0 | 15.0 | 1.0 | 10.0 | 54.0 | 9.0 | 8.0 | 16.0 | 27.0 | 14.0 | 22.0 | 24.0 |
17 | 55.0 | 42.0 | 38.0 | 171.0 | 18.0 | 23.0 | 4.0 | 27.0 | 23.0 | 8.0 | 10.0 | 19.0 | 4.0 | 8.0 | 19.0 | 31.0 |
18 | 26.0 | 17.0 | 14.0 | 43.0 | 20.0 | 24.0 | 4.0 | 33.0 | 16.0 | 17.0 | 21.0 | 17.0 | 42.0 | 40.0 | 90.0 | 76.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.938 | -0.599 | -0.04 | 0.054 | -1.022 | -0.144 | -1.6 | 0.855 | -0.599 | 0.293 | 0.383 | 0.193 | -1.114 | -0.22 | 0.339 | 0.771 |
02 | -4.4 | -0.074 | -1.022 | -1.114 | -1.77 | 0.993 | -1.77 | -0.658 | -1.215 | 0.881 | -0.181 | -0.721 | -1.975 | 1.424 | 0.523 | -0.22 |
03 | -4.4 | -0.788 | -3.126 | -2.234 | -0.86 | 1.741 | -1.454 | 1.345 | -4.4 | 0.646 | -1.77 | -0.04 | -2.584 | 0.404 | -1.77 | -0.938 |
04 | -1.114 | -4.4 | -4.4 | -1.77 | 1.504 | -4.4 | -4.4 | 1.617 | -0.788 | -4.4 | -4.4 | -1.975 | 1.203 | -4.4 | -2.584 | 0.63 |
05 | -4.4 | -4.4 | -2.234 | 2.138 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -2.584 | -4.4 | -4.4 | -3.126 | 1.968 |
06 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -1.975 | -1.975 | -4.4 | -4.4 | 2.745 |
07 | -3.126 | -4.4 | -2.234 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -0.658 | 0.613 | 2.575 | -1.454 |
08 | -2.584 | -3.126 | -4.4 | -0.788 | -0.108 | -4.4 | -4.4 | -0.04 | -0.144 | -4.4 | -2.234 | 2.508 | -2.234 | -4.4 | -4.4 | -1.975 |
09 | -0.938 | -1.328 | -0.938 | -0.108 | -4.4 | -4.4 | -4.4 | -3.126 | -3.126 | -2.584 | -4.4 | -4.4 | 0.023 | 1.184 | 0.63 | 2.036 |
10 | 0.193 | -2.584 | -4.4 | -1.77 | 0.756 | -0.346 | -3.126 | -0.302 | 0.244 | -0.86 | -1.975 | -0.788 | 1.361 | 1.016 | -0.008 | -0.04 |
11 | -0.788 | -4.4 | -2.234 | 2.073 | -0.599 | -0.302 | -1.975 | 0.932 | -2.234 | -2.234 | -1.6 | -0.26 | -1.77 | -1.022 | -0.721 | 0.269 |
12 | -3.126 | -1.454 | -0.074 | -2.584 | -1.6 | -0.439 | -2.234 | -1.328 | -4.4 | -1.6 | -0.49 | -2.234 | -0.86 | -0.108 | 2.203 | 0.785 |
13 | -3.126 | -1.328 | -1.454 | -1.975 | -2.234 | -0.008 | -2.584 | -0.22 | -0.26 | 1.815 | 0.316 | 0.881 | -1.215 | 0.112 | -1.114 | -0.108 |
14 | -0.938 | -4.4 | -1.6 | -0.49 | 1.617 | -0.144 | -1.77 | 0.894 | -0.144 | -1.215 | -0.788 | -0.938 | 0.425 | -0.49 | -0.599 | 0.445 |
15 | 1.552 | -0.392 | 0.404 | -0.074 | -0.439 | -0.721 | -2.234 | -0.599 | -0.439 | -1.77 | -1.328 | -1.215 | 1.061 | -1.77 | -0.074 | 0.023 |
16 | 1.871 | 0.083 | -0.074 | -0.938 | -0.439 | -0.721 | -3.126 | -1.114 | 0.542 | -1.215 | -1.328 | -0.658 | -0.144 | -0.788 | -0.346 | -0.26 |
17 | 0.56 | 0.293 | 0.193 | 1.69 | -0.543 | -0.302 | -1.975 | -0.144 | -0.302 | -1.328 | -1.114 | -0.49 | -1.975 | -1.328 | -0.49 | -0.008 |
18 | -0.181 | -0.599 | -0.788 | 0.316 | -0.439 | -0.26 | -1.975 | 0.054 | -0.658 | -0.599 | -0.392 | -0.599 | 0.293 | 0.244 | 1.05 | 0.881 |