We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSox2
ModelSOX2_MOUSE.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
1
ConsensushbYYWTTGTbhbb
Best auROC (human)0.944
Best auROC (mouse)0.926
Peak sets in benchmark (human)67
Peak sets in benchmark (mouse)109
Aligned words500
TF familySOX-related factors {4.1.1}
TF subfamilyGroup B {4.1.1.2}
MGIMGI:98364
EntrezGeneGeneID:20674
(SSTAR profile)
UniProt IDSOX2_MOUSE
UniProt ACP48432
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.65946
0.0005 6.611525
0.0001 8.321985
GTEx tissue expression atlas Sox2 expression
Motifs in JASPAR
MA0142.1 (Pou5f1::Sox2; Mus musculus)
MA0143.1 (Sox2; Mus musculus)
MA0143.2 (Sox2; Mus musculus)
MA0143.3 (Sox2; Mus musculus)
PCM
ACGT
0186.0124.066.0224.0
0240.0141.0145.0174.0
037.0293.075.0125.0
0412.0340.08.0140.0
05189.07.02.0302.0
060.06.010.0484.0
070.00.02.0498.0
085.038.0451.06.0
095.03.01.0491.0
1027.0130.069.0274.0
11146.0171.034.0149.0
1250.086.090.0274.0
1342.0116.0221.0121.0
PWM
ACGT
01-0.368-0.008-0.6280.578
02-1.1140.1190.1470.327
03-2.6940.845-0.5030.0
04-2.2340.993-2.5840.112
050.409-2.694-3.5730.875
06-4.4-2.819-2.3941.345
07-4.4-4.4-3.5731.373
08-2.961-1.1631.274-2.819
09-2.961-3.325-3.9031.359
10-1.4890.039-0.5840.778
110.1540.31-1.270.174
12-0.898-0.368-0.3240.778
13-1.067-0.0740.565-0.032