We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSOX3
(GeneCards)
ModelSOX3_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
B
Motif rank
0
ConsensusbSYWTTGTbn
Best auROC (human)0.685
Best auROC (mouse)0.888
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)4
Aligned words456
TF familySOX-related factors {4.1.1}
TF subfamilyGroup B {4.1.1.2}
HGNCHGNC:11199
EntrezGeneGeneID:6658
(SSTAR profile)
UniProt IDSOX3_HUMAN
UniProt ACP41225
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.5506
0.0005 12.995215
0.0001 15.089555
GTEx tissue expression atlas SOX3 expression
ReMap ChIP-seq dataset list SOX3 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
011.022.021.08.04.089.04.031.01.0110.021.019.02.074.031.015.0
022.04.02.00.017.0199.03.076.01.060.08.08.04.060.08.01.0
035.01.01.017.0110.016.00.0197.014.00.00.07.038.02.02.043.0
040.02.06.0159.00.00.01.018.00.00.00.03.00.08.011.0245.0
050.00.00.00.00.00.00.010.00.00.01.017.01.07.07.0410.0
060.01.00.00.00.02.05.00.01.00.07.00.013.0102.0320.02.0
070.02.00.012.032.04.01.068.037.06.03.0286.00.01.00.01.0
0816.020.017.016.03.04.00.06.01.03.00.00.023.0128.085.0131.0
0911.08.014.010.031.051.08.065.017.037.017.031.018.052.043.040.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-3.033-0.248-0.294-1.231-1.8791.136-1.8790.09-3.0331.347-0.294-0.392-2.4890.9530.09-0.624
02-2.489-1.879-2.489-4.318-0.5011.939-2.1380.979-3.0330.744-1.231-1.231-1.8790.744-1.231-3.033
03-1.674-3.033-3.033-0.5011.347-0.561-4.3181.928-0.691-4.318-4.318-1.3580.291-2.489-2.4890.413
04-4.318-2.489-1.5031.715-4.318-4.318-3.033-0.445-4.318-4.318-4.318-2.138-4.318-1.231-0.9252.146
05-4.318-4.318-4.318-4.318-4.318-4.318-4.318-1.017-4.318-4.318-3.033-0.501-3.033-1.358-1.3582.66
06-4.318-3.033-4.318-4.318-4.318-2.489-1.674-4.318-3.033-4.318-1.358-4.318-0.7631.2722.413-2.489
07-4.318-2.489-4.318-0.840.121-1.879-3.0330.8680.264-1.503-2.1382.301-4.318-3.033-4.318-3.033
08-0.561-0.342-0.501-0.561-2.138-1.879-4.318-1.503-3.033-2.138-4.318-4.318-0.2051.4981.091.521
09-0.925-1.231-0.691-1.0170.090.583-1.2310.824-0.5010.264-0.5010.09-0.4450.6020.4130.342