Model info
| Transcription factor | SOX3 (GeneCards) | ||||||||
| Model | SOX3_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bYCWTTGTbhb | ||||||||
| Best auROC (human) | 0.717 | ||||||||
| Best auROC (mouse) | 0.882 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | SOX-related factors {4.1.1} | ||||||||
| TF subfamily | Group B {4.1.1.2} | ||||||||
| HGNC | HGNC:11199 | ||||||||
| EntrezGene | GeneID:6658 (SSTAR profile) | ||||||||
| UniProt ID | SOX3_HUMAN | ||||||||
| UniProt AC | P41225 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SOX3 expression | ||||||||
| ReMap ChIP-seq dataset list | SOX3 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 17.0 | 128.0 | 183.0 | 172.0 |
| 02 | 4.0 | 337.0 | 63.0 | 96.0 |
| 03 | 6.0 | 377.0 | 3.0 | 114.0 |
| 04 | 164.0 | 5.0 | 3.0 | 328.0 |
| 05 | 0.0 | 5.0 | 2.0 | 493.0 |
| 06 | 0.0 | 0.0 | 1.0 | 499.0 |
| 07 | 3.0 | 47.0 | 448.0 | 2.0 |
| 08 | 4.0 | 1.0 | 1.0 | 494.0 |
| 09 | 9.0 | 173.0 | 157.0 | 161.0 |
| 10 | 45.0 | 220.0 | 31.0 | 204.0 |
| 11 | 55.0 | 174.0 | 114.0 | 157.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.92 | 0.023 | 0.377 | 0.316 |
| 02 | -3.126 | 0.984 | -0.673 | -0.26 |
| 03 | -2.819 | 1.096 | -3.325 | -0.091 |
| 04 | 0.269 | -2.961 | -3.325 | 0.957 |
| 05 | -4.4 | -2.961 | -3.573 | 1.363 |
| 06 | -4.4 | -4.4 | -3.903 | 1.375 |
| 07 | -3.325 | -0.958 | 1.268 | -3.573 |
| 08 | -3.126 | -3.903 | -3.903 | 1.365 |
| 09 | -2.484 | 0.322 | 0.225 | 0.25 |
| 10 | -1.0 | 0.56 | -1.358 | 0.485 |
| 11 | -0.805 | 0.327 | -0.091 | 0.225 |