We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSOX3
(GeneCards)
ModelSOX3_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
B
Motif rank
0
ConsensusbYCWTTGTbhb
Best auROC (human)0.717
Best auROC (mouse)0.882
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)4
Aligned words500
TF familySOX-related factors {4.1.1}
TF subfamilyGroup B {4.1.1.2}
HGNCHGNC:11199
EntrezGeneGeneID:6658
(SSTAR profile)
UniProt IDSOX3_HUMAN
UniProt ACP41225
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.468395
0.0005 6.53043
0.0001 8.304995000000002
GTEx tissue expression atlas SOX3 expression
ReMap ChIP-seq dataset list SOX3 datasets
Motifs in JASPAR
PCM
ACGT
0117.0128.0183.0172.0
024.0337.063.096.0
036.0377.03.0114.0
04164.05.03.0328.0
050.05.02.0493.0
060.00.01.0499.0
073.047.0448.02.0
084.01.01.0494.0
099.0173.0157.0161.0
1045.0220.031.0204.0
1155.0174.0114.0157.0
PWM
ACGT
01-1.920.0230.3770.316
02-3.1260.984-0.673-0.26
03-2.8191.096-3.325-0.091
040.269-2.961-3.3250.957
05-4.4-2.961-3.5731.363
06-4.4-4.4-3.9031.375
07-3.325-0.9581.268-3.573
08-3.126-3.903-3.9031.365
09-2.4840.3220.2250.25
10-1.00.56-1.3580.485
11-0.8050.327-0.0910.225