Check the newest release v12
Model info
Transcription factorSox3
ModelSOX3_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
C
Motif rank
0
ConsensusnbYCWTTGTbbbb
Best auROC (human)0.595
Best auROC (mouse)0.911
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)4
Aligned words348
TF familySOX-related factors {4.1.1}
TF subfamilyGroup B {4.1.1.2}
MGIMGI:98365
EntrezGene
UniProt IDSOX3_MOUSE
UniProt ACP53784
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.83296
0.0005 12.532975
0.0001 16.64948
GTEx tissue expression atlas Sox3 expression
Motifs in JASPAR
MA0514.1 (Sox3; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
014.012.044.06.05.027.016.021.03.034.045.015.02.029.052.029.0
020.06.06.02.02.074.06.020.00.0115.027.015.00.050.09.012.0
030.02.00.00.04.0158.02.081.00.036.00.012.00.045.00.04.0
042.00.00.02.091.02.00.0148.00.00.00.02.027.03.00.067.0
051.01.00.0118.00.00.00.05.00.00.00.00.00.04.01.0214.0
060.00.00.01.00.00.00.05.00.00.00.01.00.00.01.0336.0
070.00.00.00.00.00.00.00.00.00.01.00.02.00.0341.00.0
080.00.01.01.00.00.00.00.00.00.00.0342.00.00.00.00.0
090.00.00.00.00.00.00.00.00.01.00.00.014.0121.088.0120.0
102.03.03.06.014.067.05.036.05.041.014.028.010.055.024.031.0
111.010.018.02.028.056.08.074.05.016.011.014.05.024.037.035.0
125.09.019.06.019.032.05.050.010.020.027.017.03.043.044.035.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.611-0.570.708-1.234-1.4050.224-0.29-0.023-1.8710.4520.73-0.353-2.2240.2950.8730.295
02-4.093-1.234-1.234-2.224-2.2241.224-1.234-0.071-4.0931.6630.224-0.353-4.0930.834-0.848-0.57
03-4.093-2.224-4.093-4.093-1.6111.98-2.2241.314-4.0930.509-4.093-0.57-4.0930.73-4.093-1.611
04-2.224-4.093-4.093-2.2241.43-2.224-4.0931.915-4.093-4.093-4.093-2.2240.224-1.871-4.0931.125
05-2.774-2.774-4.0931.689-4.093-4.093-4.093-1.405-4.093-4.093-4.093-4.093-4.093-1.611-2.7742.283
06-4.093-4.093-4.093-2.774-4.093-4.093-4.093-1.405-4.093-4.093-4.093-2.774-4.093-4.093-2.7742.733
07-4.093-4.093-4.093-4.093-4.093-4.093-4.093-4.093-4.093-4.093-2.774-4.093-2.224-4.0932.748-4.093
08-4.093-4.093-2.774-2.774-4.093-4.093-4.093-4.093-4.093-4.093-4.0932.751-4.093-4.093-4.093-4.093
09-4.093-4.093-4.093-4.093-4.093-4.093-4.093-4.093-4.093-2.774-4.093-4.093-0.421.7141.3971.706
10-2.224-1.871-1.871-1.234-0.421.125-1.4050.509-1.4050.638-0.420.26-0.7460.9290.1080.361
11-2.774-0.746-0.174-2.2240.260.947-0.9611.224-1.405-0.29-0.654-0.42-1.4050.1080.5360.481
12-1.405-0.848-0.121-1.234-0.1210.392-1.4050.834-0.746-0.0710.224-0.23-1.8710.6850.7080.481