We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSox3
ModelSOX3_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
C
Motif rank
0
ConsensusnbYCWTTGTbbbb
Best auROC (human)0.595
Best auROC (mouse)0.911
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)4
Aligned words348
TF familySOX-related factors {4.1.1}
TF subfamilyGroup B {4.1.1.2}
MGIMGI:98365
EntrezGene
UniProt IDSOX3_MOUSE
UniProt ACP53784
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.83296
0.0005 12.532975
0.0001 16.64948
GTEx tissue expression atlas Sox3 expression
Motifs in JASPAR
MA0514.1 (Sox3; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
014.012.044.06.05.027.016.021.03.034.045.015.02.029.052.029.0
020.06.06.02.02.074.06.020.00.0115.027.015.00.050.09.012.0
030.02.00.00.04.0158.02.081.00.036.00.012.00.045.00.04.0
042.00.00.02.091.02.00.0148.00.00.00.02.027.03.00.067.0
051.01.00.0118.00.00.00.05.00.00.00.00.00.04.01.0214.0
060.00.00.01.00.00.00.05.00.00.00.01.00.00.01.0336.0
070.00.00.00.00.00.00.00.00.00.01.00.02.00.0341.00.0
080.00.01.01.00.00.00.00.00.00.00.0342.00.00.00.00.0
090.00.00.00.00.00.00.00.00.01.00.00.014.0121.088.0120.0
102.03.03.06.014.067.05.036.05.041.014.028.010.055.024.031.0
111.010.018.02.028.056.08.074.05.016.011.014.05.024.037.035.0
125.09.019.06.019.032.05.050.010.020.027.017.03.043.044.035.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.611-0.570.708-1.234-1.4050.224-0.29-0.023-1.8710.4520.73-0.353-2.2240.2950.8730.295
02-4.093-1.234-1.234-2.224-2.2241.224-1.234-0.071-4.0931.6630.224-0.353-4.0930.834-0.848-0.57
03-4.093-2.224-4.093-4.093-1.6111.98-2.2241.314-4.0930.509-4.093-0.57-4.0930.73-4.093-1.611
04-2.224-4.093-4.093-2.2241.43-2.224-4.0931.915-4.093-4.093-4.093-2.2240.224-1.871-4.0931.125
05-2.774-2.774-4.0931.689-4.093-4.093-4.093-1.405-4.093-4.093-4.093-4.093-4.093-1.611-2.7742.283
06-4.093-4.093-4.093-2.774-4.093-4.093-4.093-1.405-4.093-4.093-4.093-2.774-4.093-4.093-2.7742.733
07-4.093-4.093-4.093-4.093-4.093-4.093-4.093-4.093-4.093-4.093-2.774-4.093-2.224-4.0932.748-4.093
08-4.093-4.093-2.774-2.774-4.093-4.093-4.093-4.093-4.093-4.093-4.0932.751-4.093-4.093-4.093-4.093
09-4.093-4.093-4.093-4.093-4.093-4.093-4.093-4.093-4.093-2.774-4.093-4.093-0.421.7141.3971.706
10-2.224-1.871-1.871-1.234-0.421.125-1.4050.509-1.4050.638-0.420.26-0.7460.9290.1080.361
11-2.774-0.746-0.174-2.2240.260.947-0.9611.224-1.405-0.29-0.654-0.42-1.4050.1080.5360.481
12-1.405-0.848-0.121-1.234-0.1210.392-1.4050.834-0.746-0.0710.224-0.23-1.8710.6850.7080.481