Model info
| Transcription factor | Sox3 | ||||||||
| Model | SOX3_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bYCTTTGTbnb | ||||||||
| Best auROC (human) | 0.559 | ||||||||
| Best auROC (mouse) | 0.914 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 344 | ||||||||
| TF family | SOX-related factors {4.1.1} | ||||||||
| TF subfamily | Group B {4.1.1.2} | ||||||||
| MGI | MGI:98365 | ||||||||
| EntrezGene | |||||||||
| UniProt ID | SOX3_MOUSE | ||||||||
| UniProt AC | P53784 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Sox3 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 10.0 | 109.0 | 137.0 | 88.0 |
| 02 | 2.0 | 260.0 | 35.0 | 47.0 |
| 03 | 9.0 | 268.0 | 2.0 | 65.0 |
| 04 | 105.0 | 4.0 | 1.0 | 234.0 |
| 05 | 1.0 | 4.0 | 7.0 | 332.0 |
| 06 | 0.0 | 0.0 | 2.0 | 342.0 |
| 07 | 3.0 | 33.0 | 305.0 | 3.0 |
| 08 | 1.0 | 0.0 | 1.0 | 342.0 |
| 09 | 5.0 | 121.0 | 88.0 | 130.0 |
| 10 | 35.0 | 161.0 | 35.0 | 113.0 |
| 11 | 40.0 | 117.0 | 78.0 | 109.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.032 | 0.233 | 0.459 | 0.023 |
| 02 | -3.23 | 1.095 | -0.875 | -0.59 |
| 03 | -2.124 | 1.125 | -3.23 | -0.275 |
| 04 | 0.197 | -2.774 | -3.571 | 0.99 |
| 05 | -3.571 | -2.774 | -2.336 | 1.338 |
| 06 | -4.093 | -4.093 | -3.23 | 1.368 |
| 07 | -2.976 | -0.931 | 1.254 | -2.976 |
| 08 | -3.571 | -4.093 | -3.571 | 1.368 |
| 09 | -2.606 | 0.337 | 0.023 | 0.408 |
| 10 | -0.875 | 0.619 | -0.875 | 0.269 |
| 11 | -0.746 | 0.303 | -0.096 | 0.233 |