We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSOX4
(GeneCards)
ModelSOX4_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
B
Motif rank
0
ConsensusbbYCTTTGTYYbb
Best auROC (human)0.67
Best auROC (mouse)0.976
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)7
Aligned words350
TF familySOX-related factors {4.1.1}
TF subfamilyGroup C {4.1.1.3}
HGNCHGNC:11200
EntrezGeneGeneID:6659
(SSTAR profile)
UniProt IDSOX4_HUMAN
UniProt ACQ06945
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.05272
0.0005 12.078725
0.0001 16.090775
GTEx tissue expression atlas SOX4 expression
ReMap ChIP-seq dataset list SOX4 datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
016.09.015.06.08.030.024.031.03.052.037.021.00.033.024.051.0
020.07.09.01.00.073.021.030.01.050.022.027.00.056.011.042.0
030.01.00.00.00.0149.00.037.02.056.00.05.01.086.00.013.0
040.00.00.03.028.04.03.0257.00.00.00.00.013.02.01.039.0
051.02.01.037.00.00.00.06.00.01.03.00.01.07.013.0278.0
060.00.01.01.01.01.02.06.00.05.00.012.05.01.01.0314.0
070.02.04.00.00.01.06.00.00.00.04.00.00.029.0302.02.0
080.00.00.00.04.04.01.023.00.03.08.0305.00.00.01.01.0
090.02.01.01.01.01.01.04.00.01.02.07.02.0106.037.0184.0
100.02.00.01.05.070.02.033.01.023.08.09.03.0138.026.029.0
110.02.04.03.019.090.025.099.01.017.07.011.07.020.032.013.0
123.010.010.04.019.051.025.034.012.023.023.010.08.056.035.027.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.251-0.865-0.37-1.251-0.9780.3110.0910.344-1.8880.8560.519-0.04-4.1070.4060.0910.837
02-4.107-1.105-0.865-2.79-4.1071.194-0.040.311-2.790.8170.0060.207-4.1070.93-0.6710.644
03-4.107-2.79-4.107-4.107-4.1071.904-4.1070.519-2.2410.93-4.107-1.422-2.791.357-4.107-0.509
04-4.107-4.107-4.107-1.8880.243-1.628-1.8882.449-4.107-4.107-4.107-4.107-0.509-2.241-2.790.571
05-2.79-2.241-2.790.519-4.107-4.107-4.107-1.251-4.107-2.79-1.888-4.107-2.79-1.105-0.5092.527
06-4.107-4.107-2.79-2.79-2.79-2.79-2.241-1.251-4.107-1.422-4.107-0.587-1.422-2.79-2.792.649
07-4.107-2.241-1.628-4.107-4.107-2.79-1.251-4.107-4.107-4.107-1.628-4.107-4.1070.2782.61-2.241
08-4.107-4.107-4.107-4.107-1.628-1.628-2.790.049-4.107-1.888-0.9782.62-4.107-4.107-2.79-2.79
09-4.107-2.241-2.79-2.79-2.79-2.79-2.79-1.628-4.107-2.79-2.241-1.105-2.2411.5650.5192.115
10-4.107-2.241-4.107-2.79-1.4221.152-2.2410.406-2.790.049-0.978-0.865-1.8881.8280.170.278
11-4.107-2.241-1.628-1.888-0.1381.4020.1311.497-2.79-0.247-1.105-0.671-1.105-0.0880.375-0.509
12-1.888-0.763-0.763-1.628-0.1380.8370.1310.435-0.5870.0490.049-0.763-0.9780.930.4640.207