We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSOX4
(GeneCards)
ModelSOX4_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
B
Motif rank
0
ConsensusbYCTTTGTYYbb
Best auROC (human)0.64
Best auROC (mouse)0.978
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)7
Aligned words500
TF familySOX-related factors {4.1.1}
TF subfamilyGroup C {4.1.1.3}
HGNCHGNC:11200
EntrezGeneGeneID:6659
(SSTAR profile)
UniProt IDSOX4_HUMAN
UniProt ACQ06945
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.6095
0.0005 6.48691
0.0001 8.241805
GTEx tissue expression atlas SOX4 expression
ReMap ChIP-seq dataset list SOX4 datasets
Motifs in JASPAR
MA0867.1 (SOX4; Homo sapiens)
PCM
ACGT
0120.0167.0118.0195.0
029.0266.061.0164.0
033.0402.04.091.0
0453.015.05.0427.0
052.08.018.0472.0
061.06.013.0480.0
0711.046.0424.019.0
086.010.07.0477.0
097.0167.060.0266.0
1014.0287.044.0155.0
1128.0181.081.0210.0
1260.0190.0103.0147.0
PWM
ACGT
01-1.770.287-0.0570.44
02-2.4840.749-0.7050.269
03-3.3251.16-3.126-0.313
04-0.841-2.034-2.9611.22
05-3.573-2.584-1.8681.32
06-3.903-2.819-2.1631.336
07-2.311-0.9791.213-1.818
08-2.819-2.394-2.6941.33
09-2.6940.287-0.7210.749
10-2.0960.824-1.0220.213
11-1.4540.366-0.4270.514
12-0.7210.415-0.1910.16