Model info
| Transcription factor | SOX4 (GeneCards) | ||||||||
| Model | SOX4_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bYCTTTGTYYbb | ||||||||
| Best auROC (human) | 0.64 | ||||||||
| Best auROC (mouse) | 0.978 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 7 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | SOX-related factors {4.1.1} | ||||||||
| TF subfamily | Group C {4.1.1.3} | ||||||||
| HGNC | HGNC:11200 | ||||||||
| EntrezGene | GeneID:6659 (SSTAR profile) | ||||||||
| UniProt ID | SOX4_HUMAN | ||||||||
| UniProt AC | Q06945 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SOX4 expression | ||||||||
| ReMap ChIP-seq dataset list | SOX4 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 20.0 | 167.0 | 118.0 | 195.0 |
| 02 | 9.0 | 266.0 | 61.0 | 164.0 |
| 03 | 3.0 | 402.0 | 4.0 | 91.0 |
| 04 | 53.0 | 15.0 | 5.0 | 427.0 |
| 05 | 2.0 | 8.0 | 18.0 | 472.0 |
| 06 | 1.0 | 6.0 | 13.0 | 480.0 |
| 07 | 11.0 | 46.0 | 424.0 | 19.0 |
| 08 | 6.0 | 10.0 | 7.0 | 477.0 |
| 09 | 7.0 | 167.0 | 60.0 | 266.0 |
| 10 | 14.0 | 287.0 | 44.0 | 155.0 |
| 11 | 28.0 | 181.0 | 81.0 | 210.0 |
| 12 | 60.0 | 190.0 | 103.0 | 147.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.77 | 0.287 | -0.057 | 0.44 |
| 02 | -2.484 | 0.749 | -0.705 | 0.269 |
| 03 | -3.325 | 1.16 | -3.126 | -0.313 |
| 04 | -0.841 | -2.034 | -2.961 | 1.22 |
| 05 | -3.573 | -2.584 | -1.868 | 1.32 |
| 06 | -3.903 | -2.819 | -2.163 | 1.336 |
| 07 | -2.311 | -0.979 | 1.213 | -1.818 |
| 08 | -2.819 | -2.394 | -2.694 | 1.33 |
| 09 | -2.694 | 0.287 | -0.721 | 0.749 |
| 10 | -2.096 | 0.824 | -1.022 | 0.213 |
| 11 | -1.454 | 0.366 | -0.427 | 0.514 |
| 12 | -0.721 | 0.415 | -0.191 | 0.16 |