We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSox4
ModelSOX4_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusnbYCTTTGTYYbb
Best auROC (human)0.637
Best auROC (mouse)0.981
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)7
Aligned words500
TF familySOX-related factors {4.1.1}
TF subfamilyGroup C {4.1.1.3}
MGIMGI:98366
EntrezGeneGeneID:20677
(SSTAR profile)
UniProt IDSOX4_MOUSE
UniProt ACQ06831
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.50591
0.0005 12.35811
0.0001 16.216430000000003
GTEx tissue expression atlas Sox4 expression
Motifs in JASPAR
MA0867.1 (SOX4; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.09.021.031.07.050.042.047.08.059.048.040.03.053.022.060.0
021.04.07.06.08.083.021.059.00.086.016.031.05.092.010.071.0
031.03.04.06.02.0201.03.059.00.050.00.04.01.0150.00.016.0
041.00.01.02.040.08.03.0353.00.01.01.05.013.02.02.068.0
050.02.02.050.00.00.00.011.00.02.01.04.01.05.011.0411.0
060.00.00.01.00.01.00.08.02.00.00.012.00.010.03.0463.0
070.00.02.00.00.07.02.02.00.01.02.00.09.026.0431.018.0
081.00.02.06.00.01.00.033.03.06.05.0423.01.00.00.019.0
090.01.00.04.00.01.03.03.00.04.02.01.07.0154.063.0257.0
101.04.01.01.02.098.05.055.06.035.09.018.09.0166.025.065.0
116.07.05.00.024.0109.028.0142.02.012.07.019.06.046.048.039.0
1213.09.014.02.024.065.029.056.013.040.018.017.018.075.051.056.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-4.4-1.215-0.392-0.008-1.4540.4650.2930.404-1.3280.630.4250.244-2.2340.523-0.3460.646
02-3.126-1.975-1.454-1.6-1.3280.969-0.3920.63-4.41.004-0.658-0.008-1.771.072-1.1140.814
03-3.126-2.234-1.975-1.6-2.5841.851-2.2340.63-4.40.465-4.4-1.975-3.1261.559-4.4-0.658
04-3.126-4.4-3.126-2.5840.244-1.328-2.2342.413-4.4-3.126-3.126-1.77-0.86-2.584-2.5840.771
05-4.4-2.584-2.5840.465-4.4-4.4-4.4-1.022-4.4-2.584-3.126-1.975-3.126-1.77-1.0222.565
06-4.4-4.4-4.4-3.126-4.4-3.126-4.4-1.328-2.584-4.4-4.4-0.938-4.4-1.114-2.2342.684
07-4.4-4.4-2.584-4.4-4.4-1.454-2.584-2.584-4.4-3.126-2.584-4.4-1.215-0.1812.613-0.543
08-3.126-4.4-2.584-1.6-4.4-3.126-4.40.054-2.234-1.6-1.772.594-3.126-4.4-4.4-0.49
09-4.4-3.126-4.4-1.975-4.4-3.126-2.234-2.234-4.4-1.975-2.584-3.126-1.4541.5850.6952.096
10-3.126-1.975-3.126-3.126-2.5841.135-1.770.56-1.60.112-1.215-0.543-1.2151.66-0.220.726
11-1.6-1.454-1.77-4.4-0.261.241-0.1081.504-2.584-0.938-1.454-0.49-1.60.3830.4250.219
12-0.86-1.215-0.788-2.584-0.260.726-0.0740.578-0.860.244-0.543-0.599-0.5430.8680.4850.578