We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSOX5
(GeneCards)
ModelSOX5_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length8
Quality
C
Motif rank
0
ConsensusbATTGTTh
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words69
TF familySOX-related factors {4.1.1}
TF subfamilyGroup D {4.1.1.4}
HGNCHGNC:11201
EntrezGeneGeneID:6660
(SSTAR profile)
UniProt IDSOX5_HUMAN
UniProt ACP35711
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.5614799999999995
0.0005 6.16352
0.0001 7.777965
GTEx tissue expression atlas SOX5 expression
ReMap ChIP-seq dataset list SOX5 datasets
Motifs in JASPAR
PCM
ACGT
019.1121.66411.11627.539
0260.7060.04.0134.711
030.02.3564.52862.546
040.7850.7850.067.859
053.0452.35662.4591.57
060.7853.6560.064.989
073.832.9581.48361.158
0826.22910.8379.08423.28
PWM
ACGT
01-0.5940.21-0.4140.44
021.21-2.855-1.289-1.16
03-2.855-1.685-1.1931.239
04-2.301-2.301-2.8551.32
05-1.501-1.6851.238-1.946
06-2.301-1.362-2.8551.277
07-1.326-1.522-1.981.217
080.393-0.437-0.5960.279