Model info
| Transcription factor | SOX5 (GeneCards) | ||||||||
| Model | SOX5_HUMAN.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 8 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bATTGTTh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 69 | ||||||||
| TF family | SOX-related factors {4.1.1} | ||||||||
| TF subfamily | Group D {4.1.1.4} | ||||||||
| HGNC | HGNC:11201 | ||||||||
| EntrezGene | GeneID:6660 (SSTAR profile) | ||||||||
| UniProt ID | SOX5_HUMAN | ||||||||
| UniProt AC | P35711 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SOX5 expression | ||||||||
| ReMap ChIP-seq dataset list | SOX5 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 9.11 | 21.664 | 11.116 | 27.539 |
| 02 | 60.706 | 0.0 | 4.013 | 4.711 |
| 03 | 0.0 | 2.356 | 4.528 | 62.546 |
| 04 | 0.785 | 0.785 | 0.0 | 67.859 |
| 05 | 3.045 | 2.356 | 62.459 | 1.57 |
| 06 | 0.785 | 3.656 | 0.0 | 64.989 |
| 07 | 3.83 | 2.958 | 1.483 | 61.158 |
| 08 | 26.229 | 10.837 | 9.084 | 23.28 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.594 | 0.21 | -0.414 | 0.44 |
| 02 | 1.21 | -2.855 | -1.289 | -1.16 |
| 03 | -2.855 | -1.685 | -1.193 | 1.239 |
| 04 | -2.301 | -2.301 | -2.855 | 1.32 |
| 05 | -1.501 | -1.685 | 1.238 | -1.946 |
| 06 | -2.301 | -1.362 | -2.855 | 1.277 |
| 07 | -1.326 | -1.522 | -1.98 | 1.217 |
| 08 | 0.393 | -0.437 | -0.596 | 0.279 |