Model info
| Transcription factor | SOX7 (GeneCards) | ||||||||
| Model | SOX7_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 16 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RACAMTGhMATTGTYh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 700 | ||||||||
| TF family | SOX-related factors {4.1.1} | ||||||||
| TF subfamily | Group F {4.1.1.6} | ||||||||
| HGNC | HGNC:18196 | ||||||||
| EntrezGene | GeneID:83595 (SSTAR profile) | ||||||||
| UniProt ID | SOX7_HUMAN | ||||||||
| UniProt AC | Q9BT81 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SOX7 expression | ||||||||
| ReMap ChIP-seq dataset list | SOX7 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 529.25 | 60.25 | 78.25 | 32.25 |
| 02 | 663.75 | 7.75 | 7.75 | 20.75 |
| 03 | 6.75 | 671.75 | 8.75 | 12.75 |
| 04 | 680.5 | 6.5 | 6.5 | 6.5 |
| 05 | 354.5 | 340.5 | 2.5 | 2.5 |
| 06 | 1.5 | 1.5 | 1.5 | 695.5 |
| 07 | 200.0 | 2.0 | 498.0 | 0.0 |
| 08 | 312.0 | 260.0 | 21.0 | 107.0 |
| 09 | 425.0 | 190.0 | 1.0 | 84.0 |
| 10 | 700.0 | 0.0 | 0.0 | 0.0 |
| 11 | 3.0 | 12.0 | 0.0 | 685.0 |
| 12 | 0.0 | 0.0 | 0.0 | 700.0 |
| 13 | 6.25 | 2.25 | 688.25 | 3.25 |
| 14 | 13.25 | 3.25 | 3.25 | 680.25 |
| 15 | 25.25 | 66.25 | 53.25 | 555.25 |
| 16 | 98.5 | 174.5 | 88.5 | 338.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.1 | -1.049 | -0.793 | -1.651 |
| 02 | 1.326 | -2.935 | -2.935 | -2.066 |
| 03 | -3.047 | 1.338 | -2.833 | -2.508 |
| 04 | 1.351 | -3.078 | -3.078 | -3.078 |
| 05 | 0.701 | 0.661 | -3.754 | -3.754 |
| 06 | -4.031 | -4.031 | -4.031 | 1.373 |
| 07 | 0.132 | -3.883 | 1.04 | -4.681 |
| 08 | 0.574 | 0.393 | -2.054 | -0.486 |
| 09 | 0.882 | 0.082 | -4.204 | -0.724 |
| 10 | 1.379 | -4.681 | -4.681 | -4.681 |
| 11 | -3.64 | -2.561 | -4.681 | 1.358 |
| 12 | -4.681 | -4.681 | -4.681 | 1.379 |
| 13 | -3.109 | -3.816 | 1.362 | -3.587 |
| 14 | -2.474 | -3.587 | -3.587 | 1.351 |
| 15 | -1.882 | -0.956 | -1.169 | 1.148 |
| 16 | -0.568 | -0.003 | -0.673 | 0.655 |