We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSOX8
(GeneCards)
ModelSOX8_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length16
Quality
D
Motif rank
0
ConsensusWvACTGhAATTSWYbh
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words4026
TF familySOX-related factors {4.1.1}
TF subfamilyGroup E {4.1.1.5}
HGNCHGNC:11203
EntrezGeneGeneID:30812
(SSTAR profile)
UniProt IDSOX8_HUMAN
UniProt ACP57073
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.4097100000000005
0.0005 5.59191
0.0001 7.99701
GTEx tissue expression atlas SOX8 expression
ReMap ChIP-seq dataset list SOX8 datasets
Motifs in JASPAR
PCM
ACGT
011435.608327.92293.312344.188
02729.7652168.7431199.496303.022
033609.383350.537218.434222.672
04443.0873569.103183.117205.72
0547.32464.27633.1984256.228
06666.327147.823549.97336.906
071264.4942008.381537.579590.573
083519.247849.6411.94230.196
094268.235101.0064.23827.547
1050.856137.7552.8254209.59
114.23893.2562.1194301.413
1268.5141186.7972507.758637.957
132829.984110.18855.0941405.76
14102.07596.582277.263425.114
15692.869802.9981623.8751281.284
16776.2071655.631589.6761379.513
PWM
ACGT
010.266-1.206-1.3170.755
02-0.410.6780.086-1.285
031.187-1.14-1.609-1.59
04-0.9071.175-1.784-1.669
05-3.105-2.81-3.4411.351
06-0.5-1.9951.17-3.342
070.1390.601-0.714-0.621
081.161-0.258-5.609-3.53
091.354-2.369-5.159-3.616
10-3.036-2.065-5.4111.34
11-5.159-2.448-5.5661.362
12-2.7480.0760.823-0.544
130.944-2.284-2.9590.245
14-2.359-0.61-1.3731.134
15-0.461-0.3140.3890.152
16-0.3480.408-0.6220.226