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Model info
Transcription factorSOX9
(GeneCards)
ModelSOX9_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
B
Motif rank
0
ConsensusvMMAARRvnnbCWTTGTKh
Best auROC (human)0.663
Best auROC (mouse)0.987
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)25
Aligned words501
TF familySOX-related factors {4.1.1}
TF subfamilyGroup E {4.1.1.5}
HGNCHGNC:11204
EntrezGeneGeneID:6662
(SSTAR profile)
UniProt IDSOX9_HUMAN
UniProt ACP48436
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.821010000000001
0.0005 11.02946
0.0001 15.53961
GTEx tissue expression atlas SOX9 expression
ReMap ChIP-seq dataset list SOX9 datasets
Motifs in JASPAR
MA0077.1 (SOX9; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01150.073.03.017.092.01.00.04.076.04.03.05.055.02.08.07.0
0243.0304.05.021.078.02.00.00.014.00.00.00.018.08.07.00.0
0376.071.06.00.0311.01.01.01.011.01.00.00.020.01.00.00.0
04351.02.052.013.070.00.00.04.06.01.00.00.00.00.01.00.0
05221.04.0128.074.02.00.01.00.024.02.019.08.07.00.06.04.0
0660.08.0169.017.03.02.01.00.042.017.077.018.023.05.048.010.0
0718.021.083.06.023.04.02.03.092.067.0130.06.06.06.033.00.0
0834.039.055.011.029.031.08.030.068.071.083.026.05.03.02.05.0
0928.030.059.019.044.048.014.038.031.049.049.019.08.027.017.020.0
108.054.036.013.023.088.012.031.012.055.049.023.02.043.023.028.0
111.035.03.06.08.0193.03.036.00.0102.08.010.00.074.09.012.0
127.01.00.01.0230.07.02.0165.014.01.00.08.054.00.02.08.0
130.024.034.0247.00.03.00.06.00.00.00.04.00.031.09.0142.0
140.00.00.00.01.00.01.056.00.01.00.042.01.00.00.0398.0
150.00.02.00.01.00.00.00.00.00.01.00.09.094.0392.01.0
160.00.01.09.079.01.00.014.011.00.02.0382.01.00.00.00.0
171.012.022.056.00.00.01.00.00.02.00.01.021.056.079.0249.0
187.011.02.02.07.021.04.038.021.030.013.038.032.0168.042.064.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
011.5590.841-2.234-0.5991.072-3.126-4.4-1.9750.881-1.975-2.234-1.770.56-2.584-1.328-1.454
020.3162.264-1.77-0.3920.907-2.584-4.4-4.4-0.788-4.4-4.4-4.4-0.543-1.328-1.454-4.4
030.8810.814-1.6-4.42.287-3.126-3.126-3.126-1.022-3.126-4.4-4.4-0.439-3.126-4.4-4.4
042.408-2.5840.504-0.860.8-4.4-4.4-1.975-1.6-3.126-4.4-4.4-4.4-4.4-3.126-4.4
051.946-1.9751.4010.855-2.584-4.4-3.126-4.4-0.26-2.584-0.49-1.328-1.454-4.4-1.6-1.975
060.646-1.3281.678-0.599-2.234-2.584-3.126-4.40.293-0.5990.894-0.543-0.302-1.770.425-1.114
07-0.543-0.3920.969-1.6-0.302-1.975-2.584-2.2341.0720.7561.416-1.6-1.6-1.60.054-4.4
080.0830.2190.56-1.022-0.074-0.008-1.328-0.040.7710.8140.969-0.181-1.77-2.234-2.584-1.77
09-0.108-0.040.63-0.490.3390.425-0.7880.193-0.0080.4450.445-0.49-1.328-0.144-0.599-0.439
10-1.3280.5420.14-0.86-0.3021.027-0.938-0.008-0.9380.560.445-0.302-2.5840.316-0.302-0.108
11-3.1260.112-2.234-1.6-1.3281.81-2.2340.14-4.41.174-1.328-1.114-4.40.855-1.215-0.938
12-1.454-3.126-4.4-3.1261.985-1.454-2.5841.654-0.788-3.126-4.4-1.3280.542-4.4-2.584-1.328
13-4.4-0.260.0832.057-4.4-2.234-4.4-1.6-4.4-4.4-4.4-1.975-4.4-0.008-1.2151.504
14-4.4-4.4-4.4-4.4-3.126-4.4-3.1260.578-4.4-3.126-4.40.293-3.126-4.4-4.42.533
15-4.4-4.4-2.584-4.4-3.126-4.4-4.4-4.4-4.4-4.4-3.126-4.4-1.2151.0932.518-3.126
16-4.4-4.4-3.126-1.2150.92-3.126-4.4-0.788-1.022-4.4-2.5842.492-3.126-4.4-4.4-4.4
17-3.126-0.938-0.3460.578-4.4-4.4-3.126-4.4-4.4-2.584-4.4-3.126-0.3920.5780.922.065
18-1.454-1.022-2.584-2.584-1.454-0.392-1.9750.193-0.392-0.04-0.860.1930.0231.6720.2930.711