We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSOX9
(GeneCards)
ModelSOX9_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
B
Motif rank
0
ConsensusvMMAARRvnnbCWTTGTKh
Best auROC (human)0.663
Best auROC (mouse)0.987
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)25
Aligned words501
TF familySOX-related factors {4.1.1}
TF subfamilyGroup E {4.1.1.5}
HGNCHGNC:11204
EntrezGeneGeneID:6662
(SSTAR profile)
UniProt IDSOX9_HUMAN
UniProt ACP48436
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.821010000000001
0.0005 11.02946
0.0001 15.53961
GTEx tissue expression atlas SOX9 expression
ReMap ChIP-seq dataset list SOX9 datasets
Motifs in JASPAR
MA0077.1 (SOX9; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01150.073.03.017.092.01.00.04.076.04.03.05.055.02.08.07.0
0243.0304.05.021.078.02.00.00.014.00.00.00.018.08.07.00.0
0376.071.06.00.0311.01.01.01.011.01.00.00.020.01.00.00.0
04351.02.052.013.070.00.00.04.06.01.00.00.00.00.01.00.0
05221.04.0128.074.02.00.01.00.024.02.019.08.07.00.06.04.0
0660.08.0169.017.03.02.01.00.042.017.077.018.023.05.048.010.0
0718.021.083.06.023.04.02.03.092.067.0130.06.06.06.033.00.0
0834.039.055.011.029.031.08.030.068.071.083.026.05.03.02.05.0
0928.030.059.019.044.048.014.038.031.049.049.019.08.027.017.020.0
108.054.036.013.023.088.012.031.012.055.049.023.02.043.023.028.0
111.035.03.06.08.0193.03.036.00.0102.08.010.00.074.09.012.0
127.01.00.01.0230.07.02.0165.014.01.00.08.054.00.02.08.0
130.024.034.0247.00.03.00.06.00.00.00.04.00.031.09.0142.0
140.00.00.00.01.00.01.056.00.01.00.042.01.00.00.0398.0
150.00.02.00.01.00.00.00.00.00.01.00.09.094.0392.01.0
160.00.01.09.079.01.00.014.011.00.02.0382.01.00.00.00.0
171.012.022.056.00.00.01.00.00.02.00.01.021.056.079.0249.0
187.011.02.02.07.021.04.038.021.030.013.038.032.0168.042.064.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
011.5590.841-2.234-0.5991.072-3.126-4.4-1.9750.881-1.975-2.234-1.770.56-2.584-1.328-1.454
020.3162.264-1.77-0.3920.907-2.584-4.4-4.4-0.788-4.4-4.4-4.4-0.543-1.328-1.454-4.4
030.8810.814-1.6-4.42.287-3.126-3.126-3.126-1.022-3.126-4.4-4.4-0.439-3.126-4.4-4.4
042.408-2.5840.504-0.860.8-4.4-4.4-1.975-1.6-3.126-4.4-4.4-4.4-4.4-3.126-4.4
051.946-1.9751.4010.855-2.584-4.4-3.126-4.4-0.26-2.584-0.49-1.328-1.454-4.4-1.6-1.975
060.646-1.3281.678-0.599-2.234-2.584-3.126-4.40.293-0.5990.894-0.543-0.302-1.770.425-1.114
07-0.543-0.3920.969-1.6-0.302-1.975-2.584-2.2341.0720.7561.416-1.6-1.6-1.60.054-4.4
080.0830.2190.56-1.022-0.074-0.008-1.328-0.040.7710.8140.969-0.181-1.77-2.234-2.584-1.77
09-0.108-0.040.63-0.490.3390.425-0.7880.193-0.0080.4450.445-0.49-1.328-0.144-0.599-0.439
10-1.3280.5420.14-0.86-0.3021.027-0.938-0.008-0.9380.560.445-0.302-2.5840.316-0.302-0.108
11-3.1260.112-2.234-1.6-1.3281.81-2.2340.14-4.41.174-1.328-1.114-4.40.855-1.215-0.938
12-1.454-3.126-4.4-3.1261.985-1.454-2.5841.654-0.788-3.126-4.4-1.3280.542-4.4-2.584-1.328
13-4.4-0.260.0832.057-4.4-2.234-4.4-1.6-4.4-4.4-4.4-1.975-4.4-0.008-1.2151.504
14-4.4-4.4-4.4-4.4-3.126-4.4-3.1260.578-4.4-3.126-4.40.293-3.126-4.4-4.42.533
15-4.4-4.4-2.584-4.4-3.126-4.4-4.4-4.4-4.4-4.4-3.126-4.4-1.2151.0932.518-3.126
16-4.4-4.4-3.126-1.2150.92-3.126-4.4-0.788-1.022-4.4-2.5842.492-3.126-4.4-4.4-4.4
17-3.126-0.938-0.3460.578-4.4-4.4-3.126-4.4-4.4-2.584-4.4-3.126-0.3920.5780.922.065
18-1.454-1.022-2.584-2.584-1.454-0.392-1.9750.193-0.392-0.04-0.860.1930.0231.6720.2930.711