Model info
| Transcription factor | SOX9 (GeneCards) | ||||||||
| Model | SOX9_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 16 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | AAdRvnnbYWTTGTKY | ||||||||
| Best auROC (human) | 0.718 | ||||||||
| Best auROC (mouse) | 0.981 | ||||||||
| Peak sets in benchmark (human) | 6 | ||||||||
| Peak sets in benchmark (mouse) | 25 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | SOX-related factors {4.1.1} | ||||||||
| TF subfamily | Group E {4.1.1.5} | ||||||||
| HGNC | HGNC:11204 | ||||||||
| EntrezGene | GeneID:6662 (SSTAR profile) | ||||||||
| UniProt ID | SOX9_HUMAN | ||||||||
| UniProt AC | P48436 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SOX9 expression | ||||||||
| ReMap ChIP-seq dataset list | SOX9 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 402.0 | 69.0 | 22.0 | 7.0 |
| 02 | 440.0 | 2.0 | 28.0 | 30.0 |
| 03 | 206.0 | 3.0 | 144.0 | 147.0 |
| 04 | 107.0 | 25.0 | 304.0 | 64.0 |
| 05 | 117.0 | 97.0 | 261.0 | 25.0 |
| 06 | 117.0 | 129.0 | 169.0 | 85.0 |
| 07 | 95.0 | 141.0 | 149.0 | 115.0 |
| 08 | 33.0 | 214.0 | 128.0 | 125.0 |
| 09 | 18.0 | 398.0 | 31.0 | 53.0 |
| 10 | 201.0 | 39.0 | 7.0 | 253.0 |
| 11 | 0.0 | 68.0 | 47.0 | 385.0 |
| 12 | 0.0 | 0.0 | 0.0 | 500.0 |
| 13 | 2.0 | 2.0 | 495.0 | 1.0 |
| 14 | 6.0 | 1.0 | 0.0 | 493.0 |
| 15 | 19.0 | 66.0 | 97.0 | 318.0 |
| 16 | 28.0 | 283.0 | 35.0 | 154.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.16 | -0.584 | -1.681 | -2.694 |
| 02 | 1.25 | -3.573 | -1.454 | -1.389 |
| 03 | 0.495 | -3.325 | 0.14 | 0.16 |
| 04 | -0.153 | -1.561 | 0.881 | -0.658 |
| 05 | -0.065 | -0.25 | 0.73 | -1.561 |
| 06 | -0.065 | 0.031 | 0.298 | -0.38 |
| 07 | -0.271 | 0.119 | 0.174 | -0.082 |
| 08 | -1.298 | 0.533 | 0.023 | 0.0 |
| 09 | -1.868 | 1.15 | -1.358 | -0.841 |
| 10 | 0.47 | -1.138 | -2.694 | 0.699 |
| 11 | -4.4 | -0.599 | -0.958 | 1.117 |
| 12 | -4.4 | -4.4 | -4.4 | 1.377 |
| 13 | -3.573 | -3.573 | 1.367 | -3.903 |
| 14 | -2.819 | -3.903 | -4.4 | 1.363 |
| 15 | -1.818 | -0.628 | -0.25 | 0.926 |
| 16 | -1.454 | 0.81 | -1.242 | 0.206 |