We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSOX9
(GeneCards)
ModelSOX9_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
B
Motif rank
0
ConsensusAAdRvnnbYWTTGTKY
Best auROC (human)0.718
Best auROC (mouse)0.981
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)25
Aligned words500
TF familySOX-related factors {4.1.1}
TF subfamilyGroup E {4.1.1.5}
HGNCHGNC:11204
EntrezGeneGeneID:6662
(SSTAR profile)
UniProt IDSOX9_HUMAN
UniProt ACP48436
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.92821
0.0005 6.02781
0.0001 8.22356
GTEx tissue expression atlas SOX9 expression
ReMap ChIP-seq dataset list SOX9 datasets
Motifs in JASPAR
PCM
ACGT
01402.069.022.07.0
02440.02.028.030.0
03206.03.0144.0147.0
04107.025.0304.064.0
05117.097.0261.025.0
06117.0129.0169.085.0
0795.0141.0149.0115.0
0833.0214.0128.0125.0
0918.0398.031.053.0
10201.039.07.0253.0
110.068.047.0385.0
120.00.00.0500.0
132.02.0495.01.0
146.01.00.0493.0
1519.066.097.0318.0
1628.0283.035.0154.0
PWM
ACGT
011.16-0.584-1.681-2.694
021.25-3.573-1.454-1.389
030.495-3.3250.140.16
04-0.153-1.5610.881-0.658
05-0.065-0.250.73-1.561
06-0.0650.0310.298-0.38
07-0.2710.1190.174-0.082
08-1.2980.5330.0230.0
09-1.8681.15-1.358-0.841
100.47-1.138-2.6940.699
11-4.4-0.599-0.9581.117
12-4.4-4.4-4.41.377
13-3.573-3.5731.367-3.903
14-2.819-3.903-4.41.363
15-1.818-0.628-0.250.926
16-1.4540.81-1.2420.206