We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSOX9
(GeneCards)
ModelSOX9_HUMAN.H11MO.1.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
B
Motif rank
1
ConsensusYSWTTGKYY
Best auROC (human)0.777
Best auROC (mouse)0.892
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)25
Aligned words501
TF familySOX-related factors {4.1.1}
TF subfamilyGroup E {4.1.1.5}
HGNCHGNC:11204
EntrezGeneGeneID:6662
(SSTAR profile)
UniProt IDSOX9_HUMAN
UniProt ACP48436
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.789545
0.0005 6.412044999999999
0.0001 7.775985
GTEx tissue expression atlas SOX9 expression
ReMap ChIP-seq dataset list SOX9 datasets
Motifs in JASPAR
MA0077.1 (SOX9; Homo sapiens)
PCM
ACGT
0123.0226.032.0219.0
0216.0319.0101.064.0
03280.029.016.0175.0
043.04.022.0471.0
053.00.012.0485.0
0612.039.0438.011.0
077.08.0192.0293.0
0815.0195.064.0226.0
0939.0206.015.0240.0
PWM
ACGT
01-1.640.587-1.3280.555
02-1.9750.929-0.21-0.658
030.8-1.421-1.9750.333
04-3.325-3.126-1.6811.317
05-3.325-4.4-2.2341.347
06-2.234-1.1381.245-2.311
07-2.694-2.5840.4250.845
08-2.0340.44-0.6580.587
09-1.1380.495-2.0340.646