Transcription factor | SOX9 (GeneCards) | ||||||||
Model | SOX9_HUMAN.H11MO.1.B | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 9 | ||||||||
Quality | B | ||||||||
Motif rank | 1 | ||||||||
Consensus | YSWTTGKYY | ||||||||
Best auROC (human) | 0.777 | ||||||||
Best auROC (mouse) | 0.892 | ||||||||
Peak sets in benchmark (human) | 6 | ||||||||
Peak sets in benchmark (mouse) | 25 | ||||||||
Aligned words | 501 | ||||||||
TF family | SOX-related factors {4.1.1} | ||||||||
TF subfamily | Group E {4.1.1.5} | ||||||||
HGNC | HGNC:11204 | ||||||||
EntrezGene | GeneID:6662 (SSTAR profile) | ||||||||
UniProt ID | SOX9_HUMAN | ||||||||
UniProt AC | P48436 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | SOX9 expression | ||||||||
ReMap ChIP-seq dataset list | SOX9 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 23.0 | 226.0 | 32.0 | 219.0 |
02 | 16.0 | 319.0 | 101.0 | 64.0 |
03 | 280.0 | 29.0 | 16.0 | 175.0 |
04 | 3.0 | 4.0 | 22.0 | 471.0 |
05 | 3.0 | 0.0 | 12.0 | 485.0 |
06 | 12.0 | 39.0 | 438.0 | 11.0 |
07 | 7.0 | 8.0 | 192.0 | 293.0 |
08 | 15.0 | 195.0 | 64.0 | 226.0 |
09 | 39.0 | 206.0 | 15.0 | 240.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -1.64 | 0.587 | -1.328 | 0.555 |
02 | -1.975 | 0.929 | -0.21 | -0.658 |
03 | 0.8 | -1.421 | -1.975 | 0.333 |
04 | -3.325 | -3.126 | -1.681 | 1.317 |
05 | -3.325 | -4.4 | -2.234 | 1.347 |
06 | -2.234 | -1.138 | 1.245 | -2.311 |
07 | -2.694 | -2.584 | 0.425 | 0.845 |
08 | -2.034 | 0.44 | -0.658 | 0.587 |
09 | -1.138 | 0.495 | -2.034 | 0.646 |