We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSox9
ModelSOX9_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusvMMAAdRvvnbCWTTGTKb
Best auROC (human)0.655
Best auROC (mouse)0.989
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)25
Aligned words500
TF familySOX-related factors {4.1.1}
TF subfamilyGroup E {4.1.1.5}
MGIMGI:98371
EntrezGeneGeneID:20682
(SSTAR profile)
UniProt IDSOX9_MOUSE
UniProt ACQ04887
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.63251
0.0005 10.86466
0.0001 15.408460000000002
GTEx tissue expression atlas Sox9 expression
Motifs in JASPAR
MA0077.1 (SOX9; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01135.084.06.018.0100.03.00.05.075.06.03.02.046.04.09.03.0
0247.0288.03.018.095.00.00.02.018.00.00.00.015.06.07.00.0
0394.071.06.04.0292.00.00.02.010.00.00.00.020.00.00.00.0
04319.06.067.024.068.00.00.03.06.00.00.00.03.02.01.00.0
05186.05.0133.072.06.01.00.01.033.03.016.016.07.00.016.04.0
0649.012.0156.015.05.03.01.00.044.018.080.023.023.04.063.03.0
0722.017.077.05.022.08.02.05.0109.085.098.08.08.010.022.01.0
0848.038.067.08.047.041.06.026.057.063.058.021.03.07.08.01.0
0920.035.082.018.028.065.016.040.025.051.042.021.07.010.023.016.0
106.040.026.08.025.094.09.033.013.088.043.019.00.045.023.027.0
112.038.03.01.014.0220.03.030.00.096.04.01.03.073.05.06.0
1217.00.00.02.0250.03.00.0174.011.00.00.04.030.00.01.07.0
130.021.027.0260.00.01.00.02.00.00.00.01.00.022.06.0159.0
140.00.00.00.00.00.00.044.00.00.00.033.00.00.00.0422.0
150.00.00.00.00.00.00.00.00.00.00.00.09.091.0399.00.0
160.00.00.09.078.00.00.013.015.01.01.0382.00.00.00.00.0
172.08.021.062.00.00.00.01.00.01.00.00.029.047.093.0235.0
184.08.07.012.06.016.04.030.012.048.015.039.033.0158.044.063.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
011.4560.983-1.598-0.5411.157-2.232-4.398-1.7680.87-1.598-2.232-2.5820.385-1.973-1.213-2.232
020.4062.212-2.232-0.5411.106-4.398-4.398-2.582-0.541-4.398-4.398-4.398-0.719-1.598-1.452-4.398
031.0950.816-1.598-1.9732.226-4.398-4.398-2.582-1.112-4.398-4.398-4.398-0.437-4.398-4.398-4.398
042.314-1.5980.758-0.2580.773-4.398-4.398-2.232-1.598-4.398-4.398-4.398-2.232-2.582-3.124-4.398
051.775-1.7681.4410.83-1.598-3.124-4.398-3.1240.056-2.232-0.656-0.656-1.452-4.398-0.656-1.973
060.447-0.9361.6-0.719-1.768-2.232-3.124-4.3980.341-0.5410.934-0.3-0.3-1.9730.697-2.232
07-0.344-0.5970.896-1.768-0.344-1.326-2.582-1.7681.2430.9951.137-1.326-1.326-1.112-0.344-3.124
080.4270.1950.758-1.3260.4060.271-1.598-0.1790.5970.6970.615-0.39-2.232-1.452-1.326-3.124
09-0.4370.1140.959-0.541-0.1060.728-0.6560.246-0.2180.4870.294-0.39-1.452-1.112-0.3-0.656
10-1.5980.246-0.179-1.326-0.2181.095-1.2130.056-0.8581.0290.318-0.488-4.3980.363-0.3-0.142
11-2.5820.195-2.232-3.124-0.7861.943-2.232-0.038-4.3981.116-1.973-3.124-2.2320.843-1.768-1.598
12-0.597-4.398-4.398-2.5822.071-2.232-4.3981.709-1.02-4.398-4.398-1.973-0.038-4.398-3.124-1.452
13-4.398-0.39-0.1422.11-4.398-3.124-4.398-2.582-4.398-4.398-4.398-3.124-4.398-0.344-1.5981.619
14-4.398-4.398-4.398-4.398-4.398-4.398-4.3980.341-4.398-4.398-4.3980.056-4.398-4.398-4.3982.594
15-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-1.2131.0632.538-4.398
16-4.398-4.398-4.398-1.2130.909-4.398-4.398-0.858-0.719-3.124-3.1242.494-4.398-4.398-4.398-4.398
17-2.582-1.326-0.390.681-4.398-4.398-4.398-3.124-4.398-3.124-4.398-4.398-0.0720.4061.0842.009
18-1.973-1.326-1.452-0.936-1.598-0.656-1.973-0.038-0.9360.427-0.7190.2210.0561.6130.3410.697