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Model info
Transcription factorSox9
ModelSOX9_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusvMMAAdRvvnbCWTTGTKb
Best auROC (human)0.655
Best auROC (mouse)0.989
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)25
Aligned words500
TF familySOX-related factors {4.1.1}
TF subfamilyGroup E {4.1.1.5}
MGIMGI:98371
EntrezGeneGeneID:20682
(SSTAR profile)
UniProt IDSOX9_MOUSE
UniProt ACQ04887
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.63251
0.0005 10.86466
0.0001 15.408460000000002
GTEx tissue expression atlas Sox9 expression
Motifs in JASPAR
MA0077.1 (SOX9; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01135.084.06.018.0100.03.00.05.075.06.03.02.046.04.09.03.0
0247.0288.03.018.095.00.00.02.018.00.00.00.015.06.07.00.0
0394.071.06.04.0292.00.00.02.010.00.00.00.020.00.00.00.0
04319.06.067.024.068.00.00.03.06.00.00.00.03.02.01.00.0
05186.05.0133.072.06.01.00.01.033.03.016.016.07.00.016.04.0
0649.012.0156.015.05.03.01.00.044.018.080.023.023.04.063.03.0
0722.017.077.05.022.08.02.05.0109.085.098.08.08.010.022.01.0
0848.038.067.08.047.041.06.026.057.063.058.021.03.07.08.01.0
0920.035.082.018.028.065.016.040.025.051.042.021.07.010.023.016.0
106.040.026.08.025.094.09.033.013.088.043.019.00.045.023.027.0
112.038.03.01.014.0220.03.030.00.096.04.01.03.073.05.06.0
1217.00.00.02.0250.03.00.0174.011.00.00.04.030.00.01.07.0
130.021.027.0260.00.01.00.02.00.00.00.01.00.022.06.0159.0
140.00.00.00.00.00.00.044.00.00.00.033.00.00.00.0422.0
150.00.00.00.00.00.00.00.00.00.00.00.09.091.0399.00.0
160.00.00.09.078.00.00.013.015.01.01.0382.00.00.00.00.0
172.08.021.062.00.00.00.01.00.01.00.00.029.047.093.0235.0
184.08.07.012.06.016.04.030.012.048.015.039.033.0158.044.063.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
011.4560.983-1.598-0.5411.157-2.232-4.398-1.7680.87-1.598-2.232-2.5820.385-1.973-1.213-2.232
020.4062.212-2.232-0.5411.106-4.398-4.398-2.582-0.541-4.398-4.398-4.398-0.719-1.598-1.452-4.398
031.0950.816-1.598-1.9732.226-4.398-4.398-2.582-1.112-4.398-4.398-4.398-0.437-4.398-4.398-4.398
042.314-1.5980.758-0.2580.773-4.398-4.398-2.232-1.598-4.398-4.398-4.398-2.232-2.582-3.124-4.398
051.775-1.7681.4410.83-1.598-3.124-4.398-3.1240.056-2.232-0.656-0.656-1.452-4.398-0.656-1.973
060.447-0.9361.6-0.719-1.768-2.232-3.124-4.3980.341-0.5410.934-0.3-0.3-1.9730.697-2.232
07-0.344-0.5970.896-1.768-0.344-1.326-2.582-1.7681.2430.9951.137-1.326-1.326-1.112-0.344-3.124
080.4270.1950.758-1.3260.4060.271-1.598-0.1790.5970.6970.615-0.39-2.232-1.452-1.326-3.124
09-0.4370.1140.959-0.541-0.1060.728-0.6560.246-0.2180.4870.294-0.39-1.452-1.112-0.3-0.656
10-1.5980.246-0.179-1.326-0.2181.095-1.2130.056-0.8581.0290.318-0.488-4.3980.363-0.3-0.142
11-2.5820.195-2.232-3.124-0.7861.943-2.232-0.038-4.3981.116-1.973-3.124-2.2320.843-1.768-1.598
12-0.597-4.398-4.398-2.5822.071-2.232-4.3981.709-1.02-4.398-4.398-1.973-0.038-4.398-3.124-1.452
13-4.398-0.39-0.1422.11-4.398-3.124-4.398-2.582-4.398-4.398-4.398-3.124-4.398-0.344-1.5981.619
14-4.398-4.398-4.398-4.398-4.398-4.398-4.3980.341-4.398-4.398-4.3980.056-4.398-4.398-4.3982.594
15-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-4.398-1.2131.0632.538-4.398
16-4.398-4.398-4.398-1.2130.909-4.398-4.398-0.858-0.719-3.124-3.1242.494-4.398-4.398-4.398-4.398
17-2.582-1.326-0.390.681-4.398-4.398-4.398-3.124-4.398-3.124-4.398-4.398-0.0720.4061.0842.009
18-1.973-1.326-1.452-0.936-1.598-0.656-1.973-0.038-0.9360.427-0.7190.2210.0561.6130.3410.697