Model info
| Transcription factor | Sox9 | ||||||||
| Model | SOX9_MOUSE.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | bCWYTGTKYhb | ||||||||
| Best auROC (human) | 0.679 | ||||||||
| Best auROC (mouse) | 0.93 | ||||||||
| Peak sets in benchmark (human) | 6 | ||||||||
| Peak sets in benchmark (mouse) | 25 | ||||||||
| Aligned words | 499 | ||||||||
| TF family | SOX-related factors {4.1.1} | ||||||||
| TF subfamily | Group E {4.1.1.5} | ||||||||
| MGI | MGI:98371 | ||||||||
| EntrezGene | GeneID:20682 (SSTAR profile) | ||||||||
| UniProt ID | SOX9_MOUSE | ||||||||
| UniProt AC | Q04887 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Sox9 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 22.0 | 213.0 | 82.0 | 182.0 |
| 02 | 12.0 | 397.0 | 20.0 | 70.0 |
| 03 | 83.0 | 59.0 | 2.0 | 355.0 |
| 04 | 1.0 | 104.0 | 43.0 | 351.0 |
| 05 | 4.0 | 5.0 | 16.0 | 474.0 |
| 06 | 5.0 | 74.0 | 405.0 | 15.0 |
| 07 | 4.0 | 7.0 | 4.0 | 484.0 |
| 08 | 11.0 | 92.0 | 118.0 | 278.0 |
| 09 | 22.0 | 332.0 | 9.0 | 136.0 |
| 10 | 59.0 | 166.0 | 23.0 | 251.0 |
| 11 | 64.0 | 203.0 | 126.0 | 106.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.679 | 0.53 | -0.413 | 0.374 |
| 02 | -2.232 | 1.149 | -1.768 | -0.568 |
| 03 | -0.401 | -0.735 | -3.571 | 1.038 |
| 04 | -3.901 | -0.179 | -1.042 | 1.027 |
| 05 | -3.124 | -2.959 | -1.973 | 1.326 |
| 06 | -2.959 | -0.514 | 1.169 | -2.032 |
| 07 | -3.124 | -2.692 | -3.124 | 1.347 |
| 08 | -2.309 | -0.3 | -0.055 | 0.795 |
| 09 | -1.679 | 0.971 | -2.482 | 0.085 |
| 10 | -0.735 | 0.283 | -1.638 | 0.693 |
| 11 | -0.656 | 0.482 | 0.01 | -0.161 |