Model info
| Transcription factor | SP1 (GeneCards) | ||||||||
| Model | SP1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 22 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | nRGGGGCGGGGCSdSSvSSSvS | ||||||||
| Best auROC (human) | 1.0 | ||||||||
| Best auROC (mouse) | 0.957 | ||||||||
| Peak sets in benchmark (human) | 53 | ||||||||
| Peak sets in benchmark (mouse) | 11 | ||||||||
| Aligned words | 499 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors {2.3.1} | ||||||||
| TF subfamily | Sp1-like factors {2.3.1.1} | ||||||||
| HGNC | HGNC:11205 | ||||||||
| EntrezGene | GeneID:6667 (SSTAR profile) | ||||||||
| UniProt ID | SP1_HUMAN | ||||||||
| UniProt AC | P08047 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SP1 expression | ||||||||
| ReMap ChIP-seq dataset list | SP1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 157.0 | 103.0 | 166.0 | 73.0 |
| 02 | 96.0 | 50.0 | 334.0 | 19.0 |
| 03 | 22.0 | 4.0 | 404.0 | 69.0 |
| 04 | 29.0 | 4.0 | 466.0 | 0.0 |
| 05 | 0.0 | 4.0 | 495.0 | 0.0 |
| 06 | 2.0 | 0.0 | 497.0 | 0.0 |
| 07 | 16.0 | 476.0 | 2.0 | 5.0 |
| 08 | 5.0 | 0.0 | 493.0 | 1.0 |
| 09 | 1.0 | 4.0 | 462.0 | 32.0 |
| 10 | 33.0 | 1.0 | 457.0 | 8.0 |
| 11 | 9.0 | 15.0 | 455.0 | 20.0 |
| 12 | 30.0 | 433.0 | 7.0 | 29.0 |
| 13 | 29.0 | 297.0 | 95.0 | 78.0 |
| 14 | 72.0 | 56.0 | 231.0 | 140.0 |
| 15 | 41.0 | 88.0 | 352.0 | 18.0 |
| 16 | 57.0 | 83.0 | 340.0 | 19.0 |
| 17 | 80.0 | 98.0 | 287.0 | 34.0 |
| 18 | 44.0 | 133.0 | 293.0 | 29.0 |
| 19 | 60.0 | 116.0 | 290.0 | 33.0 |
| 20 | 59.0 | 72.0 | 314.0 | 54.0 |
| 21 | 60.0 | 60.0 | 352.0 | 27.0 |
| 22 | 84.0 | 93.0 | 304.0 | 18.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.227 | -0.189 | 0.283 | -0.527 |
| 02 | -0.258 | -0.896 | 0.977 | -1.816 |
| 03 | -1.679 | -3.124 | 1.167 | -0.582 |
| 04 | -1.419 | -3.124 | 1.309 | -4.398 |
| 05 | -4.398 | -3.124 | 1.369 | -4.398 |
| 06 | -3.571 | -4.398 | 1.373 | -4.398 |
| 07 | -1.973 | 1.33 | -3.571 | -2.959 |
| 08 | -2.959 | -4.398 | 1.365 | -3.901 |
| 09 | -3.901 | -3.124 | 1.3 | -1.326 |
| 10 | -1.296 | -3.901 | 1.289 | -2.582 |
| 11 | -2.482 | -2.032 | 1.285 | -1.768 |
| 12 | -1.387 | 1.236 | -2.692 | -1.419 |
| 13 | -1.419 | 0.86 | -0.269 | -0.462 |
| 14 | -0.541 | -0.786 | 0.61 | 0.114 |
| 15 | -1.088 | -0.344 | 1.029 | -1.866 |
| 16 | -0.769 | -0.401 | 0.995 | -1.816 |
| 17 | -0.437 | -0.238 | 0.826 | -1.268 |
| 18 | -1.02 | 0.063 | 0.847 | -1.419 |
| 19 | -0.719 | -0.072 | 0.837 | -1.296 |
| 20 | -0.735 | -0.541 | 0.916 | -0.821 |
| 21 | -0.719 | -0.719 | 1.029 | -1.487 |
| 22 | -0.39 | -0.29 | 0.883 | -1.866 |