We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSP1
(GeneCards)
ModelSP1_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
1
ConsensusvvKGGGCGGGGSbd
Best auROC (human)0.999
Best auROC (mouse)0.941
Peak sets in benchmark (human)53
Peak sets in benchmark (mouse)11
Aligned words432
TF familyThree-zinc finger Krüppel-related factors {2.3.1}
TF subfamilySp1-like factors {2.3.1.1}
HGNCHGNC:11205
EntrezGeneGeneID:6667
(SSTAR profile)
UniProt IDSP1_HUMAN
UniProt ACP08047
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 1.5378600000000002
0.0005 2.61226
0.0001 4.8613599999999995
GTEx tissue expression atlas SP1 expression
ReMap ChIP-seq dataset list SP1 datasets
Motifs in JASPAR
MA0079.1 (SP1; Homo sapiens)
MA0079.2 (SP1; Mus musculus/Rattus norvegicus/Homo sapiens)
MA0079.3 (SP1; Homo sapiens)
PCM
ACGT
01116.0120.0150.046.0
02101.072.0233.026.0
0343.014.0322.053.0
0431.08.0388.05.0
054.09.0415.04.0
062.09.0418.03.0
0715.0405.00.012.0
0811.03.0410.08.0
092.08.0387.035.0
1032.06.0380.014.0
1134.035.0353.010.0
1225.0335.047.025.0
1327.0239.094.072.0
1471.064.0189.0108.0
PWM
ACGT
010.0710.1040.325-0.835
02-0.066-0.3990.761-1.381
03-0.9-1.9541.083-0.698
04-1.214-2.4431.269-2.822
05-2.988-2.3431.336-2.988
06-3.438-2.3431.343-3.188
07-1.8921.312-4.279-2.092
08-2.169-3.1881.324-2.443
09-3.438-2.4431.266-1.098
10-1.184-2.6791.248-1.954
11-1.126-1.0981.175-2.252
12-1.4181.123-0.814-1.418
13-1.3460.787-0.137-0.399
14-0.412-0.5140.5540.0