Model info
| Transcription factor | SP2 (GeneCards) | ||||||||
| Model | SP2_HUMAN.H11MO.1.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | B | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | dRRGGGCGGGRM | ||||||||
| Best auROC (human) | 0.893 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 16 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 498 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors {2.3.1} | ||||||||
| TF subfamily | Sp1-like factors {2.3.1.1} | ||||||||
| HGNC | HGNC:11207 | ||||||||
| EntrezGene | GeneID:6668 (SSTAR profile) | ||||||||
| UniProt ID | SP2_HUMAN | ||||||||
| UniProt AC | Q02086 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SP2 expression | ||||||||
| ReMap ChIP-seq dataset list | SP2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 224.0 | 41.0 | 172.0 | 61.0 |
| 02 | 129.0 | 16.0 | 333.0 | 20.0 |
| 03 | 75.0 | 3.0 | 368.0 | 52.0 |
| 04 | 178.0 | 0.0 | 320.0 | 0.0 |
| 05 | 2.0 | 2.0 | 494.0 | 0.0 |
| 06 | 1.0 | 2.0 | 493.0 | 2.0 |
| 07 | 79.0 | 385.0 | 0.0 | 34.0 |
| 08 | 11.0 | 6.0 | 470.0 | 11.0 |
| 09 | 3.0 | 1.0 | 483.0 | 11.0 |
| 10 | 49.0 | 10.0 | 410.0 | 29.0 |
| 11 | 114.0 | 17.0 | 345.0 | 22.0 |
| 12 | 119.0 | 320.0 | 39.0 | 20.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.582 | -1.086 | 0.32 | -0.701 |
| 02 | 0.035 | -1.971 | 0.976 | -1.766 |
| 03 | -0.499 | -3.321 | 1.076 | -0.856 |
| 04 | 0.354 | -4.397 | 0.936 | -4.397 |
| 05 | -3.569 | -3.569 | 1.369 | -4.397 |
| 06 | -3.9 | -3.569 | 1.367 | -3.569 |
| 07 | -0.448 | 1.121 | -4.397 | -1.266 |
| 08 | -2.307 | -2.815 | 1.319 | -2.307 |
| 09 | -3.321 | -3.9 | 1.347 | -2.307 |
| 10 | -0.914 | -2.39 | 1.183 | -1.417 |
| 11 | -0.087 | -1.916 | 1.011 | -1.677 |
| 12 | -0.045 | 0.936 | -1.134 | -1.766 |