Model info
| Transcription factor | SP4 (GeneCards) | ||||||||
| Model | SP4_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 20 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vvSvdRRRGGMGGRGMhdvv | ||||||||
| Best auROC (human) | 0.983 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 5 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 499 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors {2.3.1} | ||||||||
| TF subfamily | Sp1-like factors {2.3.1.1} | ||||||||
| HGNC | HGNC:11209 | ||||||||
| EntrezGene | GeneID:6671 (SSTAR profile) | ||||||||
| UniProt ID | SP4_HUMAN | ||||||||
| UniProt AC | Q02446 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SP4 expression | ||||||||
| ReMap ChIP-seq dataset list | SP4 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 111.0 | 124.0 | 227.0 | 37.0 |
| 02 | 133.0 | 74.0 | 231.0 | 61.0 |
| 03 | 70.0 | 90.0 | 302.0 | 37.0 |
| 04 | 202.0 | 125.0 | 124.0 | 48.0 |
| 05 | 263.0 | 56.0 | 112.0 | 68.0 |
| 06 | 173.0 | 13.0 | 274.0 | 39.0 |
| 07 | 115.0 | 9.0 | 318.0 | 57.0 |
| 08 | 171.0 | 10.0 | 307.0 | 11.0 |
| 09 | 34.0 | 6.0 | 450.0 | 9.0 |
| 10 | 18.0 | 2.0 | 467.0 | 12.0 |
| 11 | 62.0 | 384.0 | 5.0 | 48.0 |
| 12 | 28.0 | 8.0 | 427.0 | 36.0 |
| 13 | 27.0 | 9.0 | 430.0 | 33.0 |
| 14 | 176.0 | 15.0 | 283.0 | 25.0 |
| 15 | 107.0 | 5.0 | 373.0 | 14.0 |
| 16 | 99.0 | 298.0 | 71.0 | 31.0 |
| 17 | 124.0 | 207.0 | 62.0 | 106.0 |
| 18 | 163.0 | 39.0 | 182.0 | 115.0 |
| 19 | 151.0 | 56.0 | 249.0 | 43.0 |
| 20 | 166.0 | 71.0 | 215.0 | 47.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.115 | -0.006 | 0.593 | -1.187 |
| 02 | 0.063 | -0.514 | 0.61 | -0.703 |
| 03 | -0.568 | -0.322 | 0.877 | -1.187 |
| 04 | 0.477 | 0.002 | -0.006 | -0.936 |
| 05 | 0.739 | -0.786 | -0.106 | -0.597 |
| 06 | 0.324 | -2.161 | 0.78 | -1.136 |
| 07 | -0.08 | -2.482 | 0.928 | -0.769 |
| 08 | 0.312 | -2.392 | 0.893 | -2.309 |
| 09 | -1.268 | -2.817 | 1.274 | -2.482 |
| 10 | -1.866 | -3.571 | 1.311 | -2.232 |
| 11 | -0.687 | 1.116 | -2.959 | -0.936 |
| 12 | -1.452 | -2.582 | 1.222 | -1.213 |
| 13 | -1.487 | -2.482 | 1.229 | -1.296 |
| 14 | 0.341 | -2.032 | 0.812 | -1.56 |
| 15 | -0.151 | -2.959 | 1.087 | -2.094 |
| 16 | -0.228 | 0.864 | -0.554 | -1.356 |
| 17 | -0.006 | 0.502 | -0.687 | -0.161 |
| 18 | 0.265 | -1.136 | 0.374 | -0.08 |
| 19 | 0.189 | -0.786 | 0.685 | -1.042 |
| 20 | 0.283 | -0.554 | 0.539 | -0.956 |