Model info
| Transcription factor | SP4 (GeneCards) | ||||||||
| Model | SP4_HUMAN.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 16 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | RvRRRGGGMGGRGvnd | ||||||||
| Best auROC (human) | 0.983 | ||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | 5 | ||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 496 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors {2.3.1} | ||||||||
| TF subfamily | Sp1-like factors {2.3.1.1} | ||||||||
| HGNC | HGNC:11209 | ||||||||
| EntrezGene | GeneID:6671 (SSTAR profile) | ||||||||
| UniProt ID | SP4_HUMAN | ||||||||
| UniProt AC | Q02446 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SP4 expression | ||||||||
| ReMap ChIP-seq dataset list | SP4 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 99.0 | 24.0 | 354.0 | 19.0 |
| 02 | 168.0 | 45.0 | 251.0 | 32.0 |
| 03 | 242.0 | 14.0 | 204.0 | 36.0 |
| 04 | 181.0 | 12.0 | 288.0 | 15.0 |
| 05 | 111.0 | 6.0 | 325.0 | 54.0 |
| 06 | 108.0 | 3.0 | 382.0 | 3.0 |
| 07 | 4.0 | 2.0 | 486.0 | 4.0 |
| 08 | 9.0 | 5.0 | 480.0 | 2.0 |
| 09 | 168.0 | 301.0 | 0.0 | 27.0 |
| 10 | 7.0 | 0.0 | 476.0 | 13.0 |
| 11 | 7.0 | 7.0 | 455.0 | 27.0 |
| 12 | 126.0 | 5.0 | 347.0 | 18.0 |
| 13 | 70.0 | 11.0 | 402.0 | 13.0 |
| 14 | 128.0 | 272.0 | 61.0 | 35.0 |
| 15 | 72.0 | 178.0 | 110.0 | 136.0 |
| 16 | 109.0 | 44.0 | 219.0 | 124.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.222 | -1.592 | 1.041 | -1.81 |
| 02 | 0.3 | -0.992 | 0.699 | -1.32 |
| 03 | 0.663 | -2.089 | 0.493 | -1.207 |
| 04 | 0.374 | -2.226 | 0.836 | -2.026 |
| 05 | -0.109 | -2.811 | 0.956 | -0.815 |
| 06 | -0.136 | -3.317 | 1.117 | -3.317 |
| 07 | -3.119 | -3.565 | 1.357 | -3.119 |
| 08 | -2.476 | -2.953 | 1.344 | -3.565 |
| 09 | 0.3 | 0.88 | -4.393 | -1.481 |
| 10 | -2.687 | -4.393 | 1.336 | -2.155 |
| 11 | -2.687 | -2.687 | 1.291 | -1.481 |
| 12 | 0.016 | -2.953 | 1.021 | -1.86 |
| 13 | -0.562 | -2.303 | 1.168 | -2.155 |
| 14 | 0.031 | 0.779 | -0.697 | -1.234 |
| 15 | -0.535 | 0.358 | -0.118 | 0.091 |
| 16 | -0.127 | -1.014 | 0.563 | 0.0 |