We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSP4
(GeneCards)
ModelSP4_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length16
Quality
A
Motif rank
1
ConsensusRvRRRGGGMGGRGvnd
Best auROC (human)0.983
Best auROC (mouse)
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)
Aligned words496
TF familyThree-zinc finger Kr├╝ppel-related factors {2.3.1}
TF subfamilySp1-like factors {2.3.1.1}
HGNCHGNC:11209
EntrezGeneGeneID:6671
(SSTAR profile)
UniProt IDSP4_HUMAN
UniProt ACQ02446
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.79411
0.0005 3.9256599999999997
0.0001 6.27191
GTEx tissue expression atlas SP4 expression
ReMap ChIP-seq dataset list SP4 datasets
Motifs in JASPAR
PCM
ACGT
0199.024.0354.019.0
02168.045.0251.032.0
03242.014.0204.036.0
04181.012.0288.015.0
05111.06.0325.054.0
06108.03.0382.03.0
074.02.0486.04.0
089.05.0480.02.0
09168.0301.00.027.0
107.00.0476.013.0
117.07.0455.027.0
12126.05.0347.018.0
1370.011.0402.013.0
14128.0272.061.035.0
1572.0178.0110.0136.0
16109.044.0219.0124.0
PWM
ACGT
01-0.222-1.5921.041-1.81
020.3-0.9920.699-1.32
030.663-2.0890.493-1.207
040.374-2.2260.836-2.026
05-0.109-2.8110.956-0.815
06-0.136-3.3171.117-3.317
07-3.119-3.5651.357-3.119
08-2.476-2.9531.344-3.565
090.30.88-4.393-1.481
10-2.687-4.3931.336-2.155
11-2.687-2.6871.291-1.481
120.016-2.9531.021-1.86
13-0.562-2.3031.168-2.155
140.0310.779-0.697-1.234
15-0.5350.358-0.1180.091
16-0.127-1.0140.5630.0