Model info
| Transcription factor | Sp5 | ||||||||
| Model | SP5_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 24 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vdddRRRvRRvRvdRRGGGMGGRG | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.956 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 499 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors {2.3.1} | ||||||||
| TF subfamily | Sp1-like factors {2.3.1.1} | ||||||||
| MGI | MGI:1927715 | ||||||||
| EntrezGene | GeneID:64406 (SSTAR profile) | ||||||||
| UniProt ID | SP5_MOUSE | ||||||||
| UniProt AC | Q9JHX2 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Sp5 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 141.0 | 69.0 | 235.0 | 54.0 |
| 02 | 163.0 | 53.0 | 197.0 | 86.0 |
| 03 | 94.0 | 55.0 | 286.0 | 64.0 |
| 04 | 119.0 | 35.0 | 271.0 | 74.0 |
| 05 | 176.0 | 28.0 | 268.0 | 27.0 |
| 06 | 104.0 | 35.0 | 316.0 | 44.0 |
| 07 | 104.0 | 71.0 | 297.0 | 27.0 |
| 08 | 185.0 | 89.0 | 163.0 | 62.0 |
| 09 | 103.0 | 29.0 | 289.0 | 78.0 |
| 10 | 92.0 | 58.0 | 302.0 | 47.0 |
| 11 | 144.0 | 49.0 | 261.0 | 45.0 |
| 12 | 82.0 | 32.0 | 351.0 | 34.0 |
| 13 | 167.0 | 85.0 | 204.0 | 43.0 |
| 14 | 211.0 | 38.0 | 151.0 | 99.0 |
| 15 | 115.0 | 31.0 | 304.0 | 49.0 |
| 16 | 117.0 | 16.0 | 270.0 | 96.0 |
| 17 | 131.0 | 3.0 | 356.0 | 9.0 |
| 18 | 15.0 | 11.0 | 469.0 | 4.0 |
| 19 | 13.0 | 16.0 | 456.0 | 14.0 |
| 20 | 307.0 | 132.0 | 4.0 | 56.0 |
| 21 | 59.0 | 8.0 | 408.0 | 24.0 |
| 22 | 4.0 | 12.0 | 468.0 | 15.0 |
| 23 | 250.0 | 0.0 | 244.0 | 5.0 |
| 24 | 28.0 | 12.0 | 436.0 | 23.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.121 | -0.582 | 0.627 | -0.821 |
| 02 | 0.265 | -0.84 | 0.452 | -0.366 |
| 03 | -0.279 | -0.804 | 0.823 | -0.656 |
| 04 | -0.047 | -1.24 | 0.769 | -0.514 |
| 05 | 0.341 | -1.452 | 0.758 | -1.487 |
| 06 | -0.179 | -1.24 | 0.922 | -1.02 |
| 07 | -0.179 | -0.554 | 0.86 | -1.487 |
| 08 | 0.39 | -0.333 | 0.265 | -0.687 |
| 09 | -0.189 | -1.419 | 0.833 | -0.462 |
| 10 | -0.3 | -0.752 | 0.877 | -0.956 |
| 11 | 0.142 | -0.916 | 0.732 | -0.998 |
| 12 | -0.413 | -1.326 | 1.027 | -1.268 |
| 13 | 0.289 | -0.378 | 0.487 | -1.042 |
| 14 | 0.521 | -1.161 | 0.189 | -0.228 |
| 15 | -0.08 | -1.356 | 0.883 | -0.916 |
| 16 | -0.063 | -1.973 | 0.765 | -0.258 |
| 17 | 0.048 | -3.323 | 1.041 | -2.482 |
| 18 | -2.032 | -2.309 | 1.315 | -3.124 |
| 19 | -2.161 | -1.973 | 1.287 | -2.094 |
| 20 | 0.893 | 0.056 | -3.124 | -0.786 |
| 21 | -0.735 | -2.582 | 1.176 | -1.598 |
| 22 | -3.124 | -2.232 | 1.313 | -2.032 |
| 23 | 0.689 | -4.398 | 0.665 | -2.959 |
| 24 | -1.452 | -2.232 | 1.243 | -1.638 |