Model info
| Transcription factor | Sp5 | ||||||||
| Model | SP5_MOUSE.H11MO.1.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | C | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | dvdvdGGGMGGRG | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.94 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 458 | ||||||||
| TF family | Three-zinc finger Krüppel-related factors {2.3.1} | ||||||||
| TF subfamily | Sp1-like factors {2.3.1.1} | ||||||||
| MGI | MGI:1927715 | ||||||||
| EntrezGene | GeneID:64406 (SSTAR profile) | ||||||||
| UniProt ID | SP5_MOUSE | ||||||||
| UniProt AC | Q9JHX2 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Sp5 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 61.0 | 46.0 | 267.0 | 72.0 |
| 02 | 119.0 | 74.0 | 219.0 | 34.0 |
| 03 | 183.0 | 38.0 | 166.0 | 59.0 |
| 04 | 111.0 | 55.0 | 226.0 | 54.0 |
| 05 | 103.0 | 13.0 | 204.0 | 126.0 |
| 06 | 127.0 | 0.0 | 319.0 | 0.0 |
| 07 | 3.0 | 2.0 | 435.0 | 6.0 |
| 08 | 38.0 | 15.0 | 385.0 | 8.0 |
| 09 | 279.0 | 124.0 | 1.0 | 42.0 |
| 10 | 54.0 | 2.0 | 384.0 | 6.0 |
| 11 | 22.0 | 9.0 | 382.0 | 33.0 |
| 12 | 252.0 | 8.0 | 167.0 | 19.0 |
| 13 | 22.0 | 15.0 | 394.0 | 15.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.592 | -0.866 | 0.865 | -0.43 |
| 02 | 0.064 | -0.403 | 0.668 | -1.157 |
| 03 | 0.49 | -1.051 | 0.394 | -0.625 |
| 04 | -0.004 | -0.693 | 0.7 | -0.711 |
| 05 | -0.078 | -2.052 | 0.598 | 0.121 |
| 06 | 0.129 | -4.306 | 1.042 | -4.306 |
| 07 | -3.218 | -3.468 | 1.351 | -2.709 |
| 08 | -1.051 | -1.923 | 1.23 | -2.474 |
| 09 | 0.909 | 0.105 | -3.801 | -0.954 |
| 10 | -0.711 | -3.468 | 1.227 | -2.709 |
| 11 | -1.57 | -2.374 | 1.222 | -1.186 |
| 12 | 0.808 | -2.474 | 0.399 | -1.706 |
| 13 | -1.57 | -1.923 | 1.253 | -1.923 |