We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSPDEF
(GeneCards)
ModelSPDEF_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length14
Quality
D
Motif rank
0
ConsensusdWvCCGKATvWhvh
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words1928
TF familyEts-related factors {3.5.2}
TF subfamilySPDEF-like factors {3.5.2.7}
HGNCHGNC:17257
EntrezGeneGeneID:25803
(SSTAR profile)
UniProt IDSPDEF_HUMAN
UniProt ACO95238
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.48496
0.0005 5.58746
0.0001 7.380415
GTEx tissue expression atlas SPDEF expression
ReMap ChIP-seq dataset list SPDEF datasets
Motifs in JASPAR
PCM
ACGT
01657.957304.226611.851314.688
02984.724185.86272.125646.01
03434.272932.22429.81992.41
049.2611863.8788.4847.098
05709.7051170.4475.7122.856
060.00.01888.7210.0
07189.11333.9351376.781288.892
081886.5580.00.02.163
09761.2280.520.521126.454
10326.213274.7871033.721254.0
111042.191179.016117.658549.856
12865.846371.033250.869400.974
13336.691387.594925.408239.028
14348.969321.085318.313900.355
PWM
ACGT
010.331-0.4370.258-0.404
020.733-0.926-1.8570.312
03-0.0830.678-0.094-1.615
04-3.751.37-3.822-3.966
050.4060.905-4.133-4.605
06-5.527-5.5271.383-5.527
07-0.909-2.5831.068-0.489
081.382-5.527-5.527-4.763
090.476-5.284-5.2840.867
10-0.368-0.5390.781-0.617
110.79-0.963-1.3780.152
120.605-0.24-0.629-0.163
13-0.337-0.1970.671-0.677
14-0.301-0.384-0.3920.644