We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSPI1
(GeneCards)
ModelSPI1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
A
Motif rank
0
ConsensusdvRRWRRGGAAGTGvvvn
Best auROC (human)0.999
Best auROC (mouse)0.999
Peak sets in benchmark (human)80
Peak sets in benchmark (mouse)204
Aligned words495
TF familyEts-related factors {3.5.2}
TF subfamilySpi-like factors {3.5.2.5}
HGNCHGNC:11241
EntrezGeneGeneID:6688
(SSTAR profile)
UniProt IDSPI1_HUMAN
UniProt ACP17947
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.89906
0.0005 7.668010000000001
0.0001 13.513760000000001
GTEx tissue expression atlas SPI1 expression
ReMap ChIP-seq dataset list SPI1 datasets
Motifs in JASPAR
MA0080.1 (SPI1; Homo sapiens)
MA0080.2 (SPI1; Homo sapiens)
MA0080.3 (Spi1; Mus musculus)
MA0080.4 (SPI1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0195.012.095.05.047.010.06.011.077.06.038.08.034.013.023.015.0
02202.05.036.010.019.02.04.016.0130.04.018.010.014.04.08.013.0
03315.08.030.012.09.05.01.00.039.08.017.02.018.03.016.012.0
04296.00.017.068.016.00.01.07.035.03.018.08.05.00.02.019.0
0550.028.0269.05.01.02.00.00.011.03.023.01.015.02.083.02.0
0634.03.038.02.029.01.05.00.0261.034.075.05.05.00.03.00.0
070.00.0329.00.029.00.09.00.011.00.0110.00.02.00.05.00.0
080.00.042.00.00.00.00.00.00.00.0453.00.00.00.00.00.0
090.00.00.00.00.00.00.00.0495.00.00.00.00.00.00.00.0
10492.00.00.03.00.00.00.00.00.00.00.00.00.00.00.00.0
1116.086.0388.02.00.00.00.00.00.00.00.00.00.00.03.00.0
120.01.00.015.04.01.00.081.02.016.05.0368.00.00.00.02.0
130.00.06.00.00.012.06.00.01.01.03.00.01.033.0431.01.0
141.00.01.00.024.06.08.08.0227.072.0111.036.00.01.00.00.0
15158.015.065.014.025.016.07.031.024.033.049.014.04.012.020.08.0
16162.013.023.013.030.020.03.023.049.043.035.014.09.015.023.020.0
1732.0109.084.025.030.018.09.034.029.018.020.017.017.018.018.017.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
011.114-0.9281.114-1.760.414-1.104-1.59-1.0120.904-1.590.203-1.3180.093-0.85-0.292-0.711
021.866-1.760.15-1.104-0.48-2.574-1.966-0.6481.426-1.966-0.533-1.104-0.778-1.966-1.318-0.85
032.309-1.318-0.03-0.928-1.205-1.76-3.117-4.3920.229-1.318-0.589-2.574-0.533-2.224-0.648-0.928
042.247-4.392-0.5890.781-0.648-4.392-3.117-1.4450.122-2.224-0.533-1.318-1.76-4.392-2.574-0.48
050.475-0.0982.152-1.76-3.117-2.574-4.392-4.392-1.012-2.224-0.292-3.117-0.711-2.5740.979-2.574
060.093-2.2240.203-2.574-0.064-3.117-1.76-4.3922.1220.0930.878-1.76-1.76-4.392-2.224-4.392
07-4.392-4.3922.353-4.392-0.064-4.392-1.205-4.392-1.012-4.3921.26-4.392-2.574-4.392-1.76-4.392
08-4.392-4.3920.302-4.392-4.392-4.392-4.392-4.392-4.392-4.3922.672-4.392-4.392-4.392-4.392-4.392
09-4.392-4.392-4.392-4.392-4.392-4.392-4.392-4.3922.761-4.392-4.392-4.392-4.392-4.392-4.392-4.392
102.755-4.392-4.392-2.224-4.392-4.392-4.392-4.392-4.392-4.392-4.392-4.392-4.392-4.392-4.392-4.392
11-0.6481.0142.518-2.574-4.392-4.392-4.392-4.392-4.392-4.392-4.392-4.392-4.392-4.392-2.224-4.392
12-4.392-3.117-4.392-0.711-1.966-3.117-4.3920.955-2.574-0.648-1.762.465-4.392-4.392-4.392-2.574
13-4.392-4.392-1.59-4.392-4.392-0.928-1.59-4.392-3.117-3.117-2.224-4.392-3.1170.0642.623-3.117
14-3.117-4.392-3.117-4.392-0.25-1.59-1.318-1.3181.9820.8381.2690.15-4.392-3.117-4.392-4.392
151.621-0.7110.736-0.778-0.21-0.648-1.4450.002-0.250.0640.455-0.778-1.966-0.928-0.429-1.318
161.646-0.85-0.292-0.85-0.03-0.429-2.224-0.2920.4550.3260.122-0.778-1.205-0.711-0.292-0.429
170.0331.250.991-0.21-0.03-0.533-1.2050.093-0.064-0.533-0.429-0.589-0.589-0.533-0.533-0.589