We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSPI1
(GeneCards)
ModelSPI1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
A
Motif rank
0
ConsensusvvRRWRRGGAAGTGvvd
Best auROC (human)0.999
Best auROC (mouse)0.997
Peak sets in benchmark (human)80
Peak sets in benchmark (mouse)204
Aligned words500
TF familyEts-related factors {3.5.2}
TF subfamilySpi-like factors {3.5.2.5}
HGNCHGNC:11241
EntrezGeneGeneID:6688
(SSTAR profile)
UniProt IDSPI1_HUMAN
UniProt ACP17947
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.65151
0.0005 4.93196
0.0001 7.54891
GTEx tissue expression atlas SPI1 expression
ReMap ChIP-seq dataset list SPI1 datasets
Motifs in JASPAR
MA0080.1 (SPI1; Homo sapiens)
MA0080.2 (SPI1; Homo sapiens)
MA0080.3 (Spi1; Mus musculus)
MA0080.4 (SPI1; Homo sapiens)
PCM
ACGT
01212.0102.0127.059.0
02246.050.0165.039.0
03343.022.084.051.0
04386.014.063.037.0
05326.07.059.0108.0
0674.034.0377.015.0
07361.024.0112.03.0
0829.00.0471.00.0
091.00.0499.00.0
10500.00.00.00.0
11499.00.00.01.0
1218.085.0397.00.0
1334.026.020.0420.0
1421.061.0408.010.0
15227.061.0166.046.0
16180.091.0159.070.0
17199.065.0129.0107.0
PWM
ACGT
010.523-0.2010.016-0.737
020.671-0.8980.275-1.138
031.002-1.681-0.392-0.879
041.119-2.096-0.673-1.189
050.951-2.694-0.737-0.144
06-0.516-1.271.096-2.034
071.053-1.6-0.108-3.325
08-1.421-4.41.317-4.4
09-3.903-4.41.375-4.4
101.377-4.4-4.4-4.4
111.375-4.4-4.4-3.903
12-1.868-0.381.147-4.4
13-1.27-1.525-1.771.203
14-1.725-0.7051.174-2.394
150.591-0.7050.281-0.979
160.361-0.3130.238-0.57
170.46-0.6430.031-0.153