Model info
| Transcription factor | SPI1 (GeneCards) | ||||||||
| Model | SPI1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 17 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vvRRWRRGGAAGTGvvd | ||||||||
| Best auROC (human) | 0.999 | ||||||||
| Best auROC (mouse) | 0.997 | ||||||||
| Peak sets in benchmark (human) | 80 | ||||||||
| Peak sets in benchmark (mouse) | 204 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Ets-related factors {3.5.2} | ||||||||
| TF subfamily | Spi-like factors {3.5.2.5} | ||||||||
| HGNC | HGNC:11241 | ||||||||
| EntrezGene | GeneID:6688 (SSTAR profile) | ||||||||
| UniProt ID | SPI1_HUMAN | ||||||||
| UniProt AC | P17947 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SPI1 expression | ||||||||
| ReMap ChIP-seq dataset list | SPI1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 212.0 | 102.0 | 127.0 | 59.0 |
| 02 | 246.0 | 50.0 | 165.0 | 39.0 |
| 03 | 343.0 | 22.0 | 84.0 | 51.0 |
| 04 | 386.0 | 14.0 | 63.0 | 37.0 |
| 05 | 326.0 | 7.0 | 59.0 | 108.0 |
| 06 | 74.0 | 34.0 | 377.0 | 15.0 |
| 07 | 361.0 | 24.0 | 112.0 | 3.0 |
| 08 | 29.0 | 0.0 | 471.0 | 0.0 |
| 09 | 1.0 | 0.0 | 499.0 | 0.0 |
| 10 | 500.0 | 0.0 | 0.0 | 0.0 |
| 11 | 499.0 | 0.0 | 0.0 | 1.0 |
| 12 | 18.0 | 85.0 | 397.0 | 0.0 |
| 13 | 34.0 | 26.0 | 20.0 | 420.0 |
| 14 | 21.0 | 61.0 | 408.0 | 10.0 |
| 15 | 227.0 | 61.0 | 166.0 | 46.0 |
| 16 | 180.0 | 91.0 | 159.0 | 70.0 |
| 17 | 199.0 | 65.0 | 129.0 | 107.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.523 | -0.201 | 0.016 | -0.737 |
| 02 | 0.671 | -0.898 | 0.275 | -1.138 |
| 03 | 1.002 | -1.681 | -0.392 | -0.879 |
| 04 | 1.119 | -2.096 | -0.673 | -1.189 |
| 05 | 0.951 | -2.694 | -0.737 | -0.144 |
| 06 | -0.516 | -1.27 | 1.096 | -2.034 |
| 07 | 1.053 | -1.6 | -0.108 | -3.325 |
| 08 | -1.421 | -4.4 | 1.317 | -4.4 |
| 09 | -3.903 | -4.4 | 1.375 | -4.4 |
| 10 | 1.377 | -4.4 | -4.4 | -4.4 |
| 11 | 1.375 | -4.4 | -4.4 | -3.903 |
| 12 | -1.868 | -0.38 | 1.147 | -4.4 |
| 13 | -1.27 | -1.525 | -1.77 | 1.203 |
| 14 | -1.725 | -0.705 | 1.174 | -2.394 |
| 15 | 0.591 | -0.705 | 0.281 | -0.979 |
| 16 | 0.361 | -0.313 | 0.238 | -0.57 |
| 17 | 0.46 | -0.643 | 0.031 | -0.153 |