We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSPIB
(GeneCards)
ModelSPIB_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
A
Motif rank
0
ConsensusvvRRWRRGGAAGTGRvd
Best auROC (human)0.998
Best auROC (mouse)0.949
Peak sets in benchmark (human)12
Peak sets in benchmark (mouse)3
Aligned words500
TF familyEts-related factors {3.5.2}
TF subfamilySpi-like factors {3.5.2.5}
HGNCHGNC:11242
EntrezGeneGeneID:6689
(SSTAR profile)
UniProt IDSPIB_HUMAN
UniProt ACQ01892
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.80931
0.0005 4.203860000000001
0.0001 7.09766
GTEx tissue expression atlas SPIB expression
ReMap ChIP-seq dataset list SPIB datasets
Motifs in JASPAR
MA0081.1 (SPIB; Homo sapiens)
PCM
ACGT
01202.093.0124.081.0
02230.058.0174.038.0
03376.016.059.049.0
04359.016.087.038.0
05334.07.051.0108.0
0682.026.0386.06.0
07329.037.0130.04.0
0838.00.0462.00.0
090.00.0500.00.0
10500.00.00.00.0
11495.00.01.04.0
1211.0103.0385.01.0
138.04.07.0481.0
142.024.0471.03.0
15290.053.0134.023.0
16232.059.0157.052.0
17270.059.0102.069.0
PWM
ACGT
010.475-0.291-0.008-0.427
020.604-0.7540.327-1.163
031.093-1.975-0.737-0.918
041.047-1.975-0.357-1.163
050.975-2.694-0.879-0.144
06-0.415-1.5251.119-2.819
070.96-1.1890.039-3.126
08-1.163-4.41.298-4.4
09-4.4-4.41.377-4.4
101.377-4.4-4.4-4.4
111.367-4.4-3.903-3.126
12-2.311-0.1911.117-3.903
13-2.584-3.126-2.6941.338
14-3.573-1.61.317-3.325
150.835-0.8410.069-1.64
160.613-0.7370.225-0.86
170.763-0.737-0.201-0.584