Model info
| Transcription factor | SPIB (GeneCards) | ||||||||
| Model | SPIB_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 17 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vvRRWRRGGAAGTGRvd | ||||||||
| Best auROC (human) | 0.998 | ||||||||
| Best auROC (mouse) | 0.949 | ||||||||
| Peak sets in benchmark (human) | 12 | ||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Ets-related factors {3.5.2} | ||||||||
| TF subfamily | Spi-like factors {3.5.2.5} | ||||||||
| HGNC | HGNC:11242 | ||||||||
| EntrezGene | GeneID:6689 (SSTAR profile) | ||||||||
| UniProt ID | SPIB_HUMAN | ||||||||
| UniProt AC | Q01892 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SPIB expression | ||||||||
| ReMap ChIP-seq dataset list | SPIB datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 202.0 | 93.0 | 124.0 | 81.0 |
| 02 | 230.0 | 58.0 | 174.0 | 38.0 |
| 03 | 376.0 | 16.0 | 59.0 | 49.0 |
| 04 | 359.0 | 16.0 | 87.0 | 38.0 |
| 05 | 334.0 | 7.0 | 51.0 | 108.0 |
| 06 | 82.0 | 26.0 | 386.0 | 6.0 |
| 07 | 329.0 | 37.0 | 130.0 | 4.0 |
| 08 | 38.0 | 0.0 | 462.0 | 0.0 |
| 09 | 0.0 | 0.0 | 500.0 | 0.0 |
| 10 | 500.0 | 0.0 | 0.0 | 0.0 |
| 11 | 495.0 | 0.0 | 1.0 | 4.0 |
| 12 | 11.0 | 103.0 | 385.0 | 1.0 |
| 13 | 8.0 | 4.0 | 7.0 | 481.0 |
| 14 | 2.0 | 24.0 | 471.0 | 3.0 |
| 15 | 290.0 | 53.0 | 134.0 | 23.0 |
| 16 | 232.0 | 59.0 | 157.0 | 52.0 |
| 17 | 270.0 | 59.0 | 102.0 | 69.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.475 | -0.291 | -0.008 | -0.427 |
| 02 | 0.604 | -0.754 | 0.327 | -1.163 |
| 03 | 1.093 | -1.975 | -0.737 | -0.918 |
| 04 | 1.047 | -1.975 | -0.357 | -1.163 |
| 05 | 0.975 | -2.694 | -0.879 | -0.144 |
| 06 | -0.415 | -1.525 | 1.119 | -2.819 |
| 07 | 0.96 | -1.189 | 0.039 | -3.126 |
| 08 | -1.163 | -4.4 | 1.298 | -4.4 |
| 09 | -4.4 | -4.4 | 1.377 | -4.4 |
| 10 | 1.377 | -4.4 | -4.4 | -4.4 |
| 11 | 1.367 | -4.4 | -3.903 | -3.126 |
| 12 | -2.311 | -0.191 | 1.117 | -3.903 |
| 13 | -2.584 | -3.126 | -2.694 | 1.338 |
| 14 | -3.573 | -1.6 | 1.317 | -3.325 |
| 15 | 0.835 | -0.841 | 0.069 | -1.64 |
| 16 | 0.613 | -0.737 | 0.225 | -0.86 |
| 17 | 0.763 | -0.737 | -0.201 | -0.584 |