Model info
| Transcription factor | Spib | ||||||||
| Model | SPIB_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 17 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RAAWGRGGAAGTGRvWn | ||||||||
| Best auROC (human) | 0.996 | ||||||||
| Best auROC (mouse) | 0.977 | ||||||||
| Peak sets in benchmark (human) | 12 | ||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 458 | ||||||||
| TF family | Ets-related factors {3.5.2} | ||||||||
| TF subfamily | Spi-like factors {3.5.2.5} | ||||||||
| MGI | MGI:892986 | ||||||||
| EntrezGene | GeneID:272382 (SSTAR profile) | ||||||||
| UniProt ID | SPIB_MOUSE | ||||||||
| UniProt AC | O35906 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Spib expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 261.0 | 29.0 | 141.0 | 27.0 |
| 02 | 365.0 | 12.0 | 50.0 | 31.0 |
| 03 | 371.0 | 10.0 | 60.0 | 17.0 |
| 04 | 328.0 | 9.0 | 38.0 | 83.0 |
| 05 | 57.0 | 29.0 | 365.0 | 7.0 |
| 06 | 314.0 | 35.0 | 106.0 | 3.0 |
| 07 | 27.0 | 0.0 | 431.0 | 0.0 |
| 08 | 0.0 | 0.0 | 458.0 | 0.0 |
| 09 | 458.0 | 0.0 | 0.0 | 0.0 |
| 10 | 455.0 | 0.0 | 0.0 | 3.0 |
| 11 | 14.0 | 58.0 | 386.0 | 0.0 |
| 12 | 10.0 | 6.0 | 2.0 | 440.0 |
| 13 | 0.0 | 7.0 | 450.0 | 1.0 |
| 14 | 267.0 | 42.0 | 134.0 | 15.0 |
| 15 | 216.0 | 60.0 | 133.0 | 49.0 |
| 16 | 291.0 | 43.0 | 58.0 | 66.0 |
| 17 | 108.0 | 151.0 | 133.0 | 66.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.817 | -1.335 | 0.206 | -1.403 |
| 02 | 1.15 | -2.149 | -0.812 | -1.272 |
| 03 | 1.166 | -2.309 | -0.634 | -1.834 |
| 04 | 1.044 | -2.399 | -1.077 | -0.317 |
| 05 | -0.684 | -1.335 | 1.15 | -2.61 |
| 06 | 1.0 | -1.156 | -0.076 | -3.243 |
| 07 | -1.403 | -4.327 | 1.316 | -4.327 |
| 08 | -4.327 | -4.327 | 1.376 | -4.327 |
| 09 | 1.376 | -4.327 | -4.327 | -4.327 |
| 10 | 1.37 | -4.327 | -4.327 | -3.243 |
| 11 | -2.011 | -0.667 | 1.206 | -4.327 |
| 12 | -2.309 | -2.735 | -3.492 | 1.336 |
| 13 | -4.327 | -2.61 | 1.359 | -3.825 |
| 14 | 0.839 | -0.98 | 0.155 | -1.949 |
| 15 | 0.628 | -0.634 | 0.148 | -0.831 |
| 16 | 0.925 | -0.958 | -0.667 | -0.541 |
| 17 | -0.058 | 0.274 | 0.148 | -0.541 |