Model info
| Transcription factor | SPIC (GeneCards) | ||||||||
| Model | SPIC_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | HT-SELEX | ||||||||
| Model release | HOCOMOCOv10 | ||||||||
| Model length | 13 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dvddRWGKRdddd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 263 | ||||||||
| TF family | Ets-related factors {3.5.2} | ||||||||
| TF subfamily | Spi-like factors {3.5.2.5} | ||||||||
| HGNC | HGNC:29549 | ||||||||
| EntrezGene | GeneID:121599 (SSTAR profile) | ||||||||
| UniProt ID | SPIC_HUMAN | ||||||||
| UniProt AC | Q8N5J4 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SPIC expression | ||||||||
| ReMap ChIP-seq dataset list | SPIC datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 51.408 | 40.838 | 103.161 | 68.015 |
| 02 | 92.729 | 46.666 | 88.642 | 35.384 |
| 03 | 69.444 | 13.746 | 104.1 | 76.131 |
| 04 | 69.42 | 8.05 | 126.435 | 59.518 |
| 05 | 131.947 | 0.0 | 71.815 | 59.66 |
| 06 | 162.579 | 3.232 | 0.0 | 97.611 |
| 07 | 0.0 | 0.0 | 263.422 | 0.0 |
| 08 | 0.0 | 21.914 | 176.033 | 65.475 |
| 09 | 43.988 | 19.617 | 186.665 | 13.152 |
| 10 | 52.241 | 23.702 | 110.013 | 77.467 |
| 11 | 102.268 | 16.892 | 86.899 | 57.363 |
| 12 | 99.241 | 20.917 | 111.636 | 31.629 |
| 13 | 52.993 | 28.621 | 141.032 | 40.776 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.242 | -0.465 | 0.441 | 0.032 |
| 02 | 0.336 | -0.336 | 0.292 | -0.604 |
| 03 | 0.052 | -1.491 | 0.45 | 0.142 |
| 04 | 0.052 | -1.963 | 0.642 | -0.099 |
| 05 | 0.685 | -3.877 | 0.085 | -0.097 |
| 06 | 0.891 | -2.677 | -3.877 | 0.387 |
| 07 | -3.877 | -3.877 | 1.371 | -3.877 |
| 08 | -3.877 | -1.06 | 0.97 | -0.006 |
| 09 | -0.393 | -1.163 | 1.028 | -1.531 |
| 10 | -0.226 | -0.986 | 0.505 | 0.159 |
| 11 | 0.433 | -1.302 | 0.272 | -0.135 |
| 12 | 0.403 | -1.103 | 0.519 | -0.711 |
| 13 | -0.212 | -0.807 | 0.75 | -0.467 |