SPIC_HUMAN.H11MO.0.D motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

SPIC
(GeneCards)

Model

SPIC_HUMAN.H11MO.0.D

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

HT-SELEX

Model release

HOCOMOCOv10

Model length

13

Quality

D

Motif rank

0

Consensus

dvddRWGKRdddd

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

263

TF family

Ets-related factors {3.5.2}

TF subfamily

Spi-like factors {3.5.2.5}

HGNC

EntrezGene

GeneID:121599
(SSTAR profile)

UniProt ID

UniProt AC

Q8N5J4
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.406359999999999
0.0005	5.89101
0.0001	6.8030100000000004

GTEx tissue expression atlas

SPIC expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

MA0687.1 (SPIC; Homo sapiens)

PCM

	A	C	G	T
01	51.408	40.838	103.161	68.015
02	92.729	46.666	88.642	35.384
03	69.444	13.746	104.1	76.131
04	69.42	8.05	126.435	59.518
05	131.947	0.0	71.815	59.66
06	162.579	3.232	0.0	97.611
07	0.0	0.0	263.422	0.0
08	0.0	21.914	176.033	65.475
09	43.988	19.617	186.665	13.152
10	52.241	23.702	110.013	77.467
11	102.268	16.892	86.899	57.363
12	99.241	20.917	111.636	31.629
13	52.993	28.621	141.032	40.776

PWM

	A	C	G	T
01	-0.242	-0.465	0.441	0.032
02	0.336	-0.336	0.292	-0.604
03	0.052	-1.491	0.45	0.142
04	0.052	-1.963	0.642	-0.099
05	0.685	-3.877	0.085	-0.097
06	0.891	-2.677	-3.877	0.387
07	-3.877	-3.877	1.371	-3.877
08	-3.877	-1.06	0.97	-0.006
09	-0.393	-1.163	1.028	-1.531
10	-0.226	-0.986	0.505	0.159
11	0.433	-1.302	0.272	-0.135
12	0.403	-1.103	0.519	-0.711
13	-0.212	-0.807	0.75	-0.467