SPZ1_HUMAN.H11MO.0.D motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

SPZ1
(GeneCards)

Model

SPZ1_HUMAN.H11MO.0.D

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

16

Quality

D

Motif rank

0

Consensus

nSRSKKTTMCMbhbGn

Best auROC (human)

Best auROC (mouse)

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

Aligned words

11

TF family

TF subfamily

HGNC

EntrezGene

GeneID:84654
(SSTAR profile)

UniProt ID

UniProt AC

Q9BXG8
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	4.197609999999999
0.0005	4.85096
0.0001	6.222765

GTEx tissue expression atlas

SPZ1 expression

ReMap ChIP-seq dataset list

Motifs in JASPAR

MA0111.1 (Spz1; Mus musculus)

PCM

	A	C	G	T
01	2.5	5.5	1.5	1.5
02	0.0	2.0	8.0	1.0
03	2.0	1.0	8.0	0.0
04	0.0	7.0	3.0	1.0
05	2.0	0.0	3.0	6.0
06	1.0	0.0	8.0	2.0
07	4.0	0.0	0.0	7.0
08	5.0	0.0	0.0	6.0
09	7.0	3.0	1.0	0.0
10	1.0	9.0	1.0	0.0
11	3.0	6.0	2.0	0.0
12	0.0	5.0	3.0	3.0
13	2.0	3.0	1.0	5.0
14	0.0	2.0	7.0	2.0
15	0.0	1.0	10.0	0.0
16	1.75	1.75	5.75	1.75

PWM

	A	C	G	T
01	-0.078	0.599	-0.467	-0.467
02	-1.721	-0.253	0.943	-0.739
03	-0.253	-0.739	0.943	-1.721
04	-1.721	0.819	0.072	-0.739
05	-0.253	-1.721	0.072	0.678
06	-0.739	-1.721	0.943	-0.253
07	0.317	-1.721	-1.721	0.819
08	0.514	-1.721	-1.721	0.678
09	0.819	0.072	-0.739	-1.721
10	-0.739	1.053	-0.739	-1.721
11	0.072	0.678	-0.253	-1.721
12	-1.721	0.514	0.072	0.072
13	-0.253	0.072	-0.739	0.514
14	-1.721	-0.253	0.819	-0.253
15	-1.721	-0.739	1.152	-1.721
16	-0.355	-0.355	0.64	-0.355