Check the newest release v13
Model info
Transcription factorSREBF1
(GeneCards)
ModelSRBP1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusnvTSRSGTGAbn
Best auROC (human)0.919
Best auROC (mouse)0.699
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)23
Aligned words603
TF familybHLH-ZIP factors {1.2.6}
TF subfamilySREBP factors {1.2.6.3}
HGNCHGNC:11289
EntrezGeneGeneID:6720
(SSTAR profile)
UniProt IDSRBP1_HUMAN
UniProt ACP36956
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.013335
0.0005 10.724920000000001
0.0001 14.088294999999999
GTEx tissue expression atlas SREBF1 expression
ReMap ChIP-seq dataset list SREBF1 datasets
Motifs in JASPAR
MA0595.1 (SREBF1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0130.014.065.03.048.031.025.01.046.036.076.08.018.011.077.011.0
0213.011.016.0102.012.01.01.078.015.06.013.0209.02.02.04.015.0
035.028.08.01.02.016.02.00.01.024.08.01.012.0147.0241.04.0
048.00.09.03.0120.02.048.045.031.05.0181.042.04.00.02.00.0
051.021.0135.06.02.01.04.00.013.073.0110.044.01.04.083.02.0
065.01.011.00.03.010.086.00.08.038.0283.03.00.03.049.00.0
071.00.00.015.08.00.00.044.082.02.08.0337.02.00.00.01.0
080.00.090.03.00.00.02.00.01.00.06.01.00.00.0396.01.0
091.00.00.00.00.00.00.00.0438.04.014.038.05.00.00.00.0
101.0169.0121.0153.03.00.00.01.00.00.07.07.03.01.027.07.0
111.03.01.02.069.043.019.039.031.063.034.027.018.036.081.033.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.04-0.7880.726-2.2340.425-0.008-0.22-3.1260.3830.140.881-1.328-0.543-1.0220.894-1.022
02-0.86-1.022-0.6581.174-0.938-3.126-3.1260.907-0.721-1.6-0.861.89-2.584-2.584-1.975-0.721
03-1.77-0.108-1.328-3.126-2.584-0.658-2.584-4.4-3.126-0.26-1.328-3.126-0.9381.5392.032-1.975
04-1.328-4.4-1.215-2.2341.336-2.5840.4250.361-0.008-1.771.7460.293-1.975-4.4-2.584-4.4
05-3.126-0.3921.454-1.6-2.584-3.126-1.975-4.4-0.860.8411.250.339-3.126-1.9750.969-2.584
06-1.77-3.126-1.022-4.4-2.234-1.1141.004-4.4-1.3280.1932.192-2.234-4.4-2.2340.445-4.4
07-3.126-4.4-4.4-0.721-1.328-4.4-4.40.3390.957-2.584-1.3282.367-2.584-4.4-4.4-3.126
08-4.4-4.41.05-2.234-4.4-4.4-2.584-4.4-3.126-4.4-1.6-3.126-4.4-4.42.528-3.126
09-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.42.629-1.975-0.7880.193-1.77-4.4-4.4-4.4
10-3.1261.6781.3451.579-2.234-4.4-4.4-3.126-4.4-4.4-1.454-1.454-2.234-3.126-0.144-1.454
11-3.126-2.234-3.126-2.5840.7850.316-0.490.219-0.0080.6950.083-0.144-0.5430.140.9450.054