We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSREBF1
(GeneCards)
ModelSRBP1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusnvTSRSGTGAbn
Best auROC (human)0.919
Best auROC (mouse)0.699
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)23
Aligned words603
TF familybHLH-ZIP factors {1.2.6}
TF subfamilySREBP factors {1.2.6.3}
HGNCHGNC:11289
EntrezGeneGeneID:6720
(SSTAR profile)
UniProt IDSRBP1_HUMAN
UniProt ACP36956
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.013335
0.0005 10.724920000000001
0.0001 14.088294999999999
GTEx tissue expression atlas SREBF1 expression
ReMap ChIP-seq dataset list SREBF1 datasets
Motifs in JASPAR
MA0595.1 (SREBF1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0130.014.065.03.048.031.025.01.046.036.076.08.018.011.077.011.0
0213.011.016.0102.012.01.01.078.015.06.013.0209.02.02.04.015.0
035.028.08.01.02.016.02.00.01.024.08.01.012.0147.0241.04.0
048.00.09.03.0120.02.048.045.031.05.0181.042.04.00.02.00.0
051.021.0135.06.02.01.04.00.013.073.0110.044.01.04.083.02.0
065.01.011.00.03.010.086.00.08.038.0283.03.00.03.049.00.0
071.00.00.015.08.00.00.044.082.02.08.0337.02.00.00.01.0
080.00.090.03.00.00.02.00.01.00.06.01.00.00.0396.01.0
091.00.00.00.00.00.00.00.0438.04.014.038.05.00.00.00.0
101.0169.0121.0153.03.00.00.01.00.00.07.07.03.01.027.07.0
111.03.01.02.069.043.019.039.031.063.034.027.018.036.081.033.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.04-0.7880.726-2.2340.425-0.008-0.22-3.1260.3830.140.881-1.328-0.543-1.0220.894-1.022
02-0.86-1.022-0.6581.174-0.938-3.126-3.1260.907-0.721-1.6-0.861.89-2.584-2.584-1.975-0.721
03-1.77-0.108-1.328-3.126-2.584-0.658-2.584-4.4-3.126-0.26-1.328-3.126-0.9381.5392.032-1.975
04-1.328-4.4-1.215-2.2341.336-2.5840.4250.361-0.008-1.771.7460.293-1.975-4.4-2.584-4.4
05-3.126-0.3921.454-1.6-2.584-3.126-1.975-4.4-0.860.8411.250.339-3.126-1.9750.969-2.584
06-1.77-3.126-1.022-4.4-2.234-1.1141.004-4.4-1.3280.1932.192-2.234-4.4-2.2340.445-4.4
07-3.126-4.4-4.4-0.721-1.328-4.4-4.40.3390.957-2.584-1.3282.367-2.584-4.4-4.4-3.126
08-4.4-4.41.05-2.234-4.4-4.4-2.584-4.4-3.126-4.4-1.6-3.126-4.4-4.42.528-3.126
09-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.42.629-1.975-0.7880.193-1.77-4.4-4.4-4.4
10-3.1261.6781.3451.579-2.234-4.4-4.4-3.126-4.4-4.4-1.454-1.454-2.234-3.126-0.144-1.454
11-3.126-2.234-3.126-2.5840.7850.316-0.490.219-0.0080.6950.083-0.144-0.5430.140.9450.054