Model info
| Transcription factor | SREBF1 (GeneCards) | ||||||||
| Model | SRBP1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dRKSRSGTGAb | ||||||||
| Best auROC (human) | 0.92 | ||||||||
| Best auROC (mouse) | 0.67 | ||||||||
| Peak sets in benchmark (human) | 5 | ||||||||
| Peak sets in benchmark (mouse) | 23 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | bHLH-ZIP factors {1.2.6} | ||||||||
| TF subfamily | SREBP factors {1.2.6.3} | ||||||||
| HGNC | HGNC:11289 | ||||||||
| EntrezGene | GeneID:6720 (SSTAR profile) | ||||||||
| UniProt ID | SRBP1_HUMAN | ||||||||
| UniProt AC | P36956 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SREBF1 expression | ||||||||
| ReMap ChIP-seq dataset list | SREBF1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 142.0 | 57.0 | 188.0 | 113.0 |
| 02 | 137.0 | 60.0 | 276.0 | 27.0 |
| 03 | 21.0 | 9.0 | 83.0 | 387.0 |
| 04 | 10.0 | 219.0 | 266.0 | 5.0 |
| 05 | 195.0 | 6.0 | 220.0 | 79.0 |
| 06 | 16.0 | 96.0 | 310.0 | 78.0 |
| 07 | 13.0 | 43.0 | 441.0 | 3.0 |
| 08 | 83.0 | 5.0 | 15.0 | 397.0 |
| 09 | 0.0 | 7.0 | 493.0 | 0.0 |
| 10 | 420.0 | 15.0 | 22.0 | 43.0 |
| 11 | 5.0 | 156.0 | 187.0 | 152.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.126 | -0.771 | 0.404 | -0.1 |
| 02 | 0.091 | -0.721 | 0.785 | -1.489 |
| 03 | -1.725 | -2.484 | -0.403 | 1.122 |
| 04 | -2.394 | 0.555 | 0.749 | -2.961 |
| 05 | 0.44 | -2.819 | 0.56 | -0.452 |
| 06 | -1.975 | -0.26 | 0.901 | -0.464 |
| 07 | -2.163 | -1.044 | 1.252 | -3.325 |
| 08 | -0.403 | -2.961 | -2.034 | 1.147 |
| 09 | -4.4 | -2.694 | 1.363 | -4.4 |
| 10 | 1.203 | -2.034 | -1.681 | -1.044 |
| 11 | -2.961 | 0.219 | 0.399 | 0.193 |