We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSREBF1
(GeneCards)
ModelSRBP1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
0
ConsensusdRKSRSGTGAb
Best auROC (human)0.92
Best auROC (mouse)0.67
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)23
Aligned words500
TF familybHLH-ZIP factors {1.2.6}
TF subfamilySREBP factors {1.2.6.3}
HGNCHGNC:11289
EntrezGeneGeneID:6720
(SSTAR profile)
UniProt IDSRBP1_HUMAN
UniProt ACP36956
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.7030899999999995
0.0005 5.50676
0.0001 7.089475
GTEx tissue expression atlas SREBF1 expression
ReMap ChIP-seq dataset list SREBF1 datasets
Motifs in JASPAR
MA0595.1 (SREBF1; Homo sapiens)
PCM
ACGT
01142.057.0188.0113.0
02137.060.0276.027.0
0321.09.083.0387.0
0410.0219.0266.05.0
05195.06.0220.079.0
0616.096.0310.078.0
0713.043.0441.03.0
0883.05.015.0397.0
090.07.0493.00.0
10420.015.022.043.0
115.0156.0187.0152.0
PWM
ACGT
010.126-0.7710.404-0.1
020.091-0.7210.785-1.489
03-1.725-2.484-0.4031.122
04-2.3940.5550.749-2.961
050.44-2.8190.56-0.452
06-1.975-0.260.901-0.464
07-2.163-1.0441.252-3.325
08-0.403-2.961-2.0341.147
09-4.4-2.6941.363-4.4
101.203-2.034-1.681-1.044
11-2.9610.2190.3990.193