Model info
| Transcription factor | Srebf1 | ||||||||
| Model | SRBP1_MOUSE.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 11 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vRTSRSSWGWb | ||||||||
| Best auROC (human) | 0.893 | ||||||||
| Best auROC (mouse) | 0.735 | ||||||||
| Peak sets in benchmark (human) | 5 | ||||||||
| Peak sets in benchmark (mouse) | 23 | ||||||||
| Aligned words | 2191 | ||||||||
| TF family | bHLH-ZIP factors {1.2.6} | ||||||||
| TF subfamily | SREBP factors {1.2.6.3} | ||||||||
| MGI | MGI:107606 | ||||||||
| EntrezGene | GeneID:20787 (SSTAR profile) | ||||||||
| UniProt ID | SRBP1_MOUSE | ||||||||
| UniProt AC | Q9WTN3 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Srebf1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 428.377 | 462.09 | 989.497 | 289.741 |
| 02 | 502.441 | 461.553 | 1167.932 | 37.778 |
| 03 | 46.24 | 120.647 | 54.011 | 1948.806 |
| 04 | 143.263 | 538.783 | 1374.386 | 113.272 |
| 05 | 605.569 | 6.847 | 1440.052 | 117.236 |
| 06 | 145.802 | 591.328 | 1242.838 | 189.736 |
| 07 | 84.199 | 681.668 | 1397.548 | 6.29 |
| 08 | 212.667 | 176.748 | 108.078 | 1672.21 |
| 09 | 6.858 | 51.514 | 2096.533 | 14.799 |
| 10 | 1719.647 | 60.749 | 113.335 | 275.972 |
| 11 | 73.036 | 505.389 | 932.93 | 658.349 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.235 | -0.16 | 0.6 | -0.624 |
| 02 | -0.076 | -0.161 | 0.765 | -2.618 |
| 03 | -2.425 | -1.491 | -2.275 | 1.276 |
| 04 | -1.322 | -0.007 | 0.928 | -1.553 |
| 05 | 0.11 | -4.129 | 0.974 | -1.519 |
| 06 | -1.304 | 0.086 | 0.827 | -1.044 |
| 07 | -1.844 | 0.228 | 0.944 | -4.194 |
| 08 | -0.931 | -1.114 | -1.599 | 1.123 |
| 09 | -4.127 | -2.321 | 1.349 | -3.483 |
| 10 | 1.151 | -2.162 | -1.552 | -0.672 |
| 11 | -1.983 | -0.07 | 0.541 | 0.193 |