We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSREBF2
(GeneCards)
ModelSRBP2_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length13
Quality
B
Motif rank
0
ConsensusvvvWGGvSWGRnb
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words2363
TF familybHLH-ZIP factors {1.2.6}
TF subfamilySREBP factors {1.2.6.3}
HGNCHGNC:11290
EntrezGeneGeneID:6721
(SSTAR profile)
UniProt IDSRBP2_HUMAN
UniProt ACQ12772
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.713559999999999
0.0005 5.45376
0.0001 6.900120000000001
GTEx tissue expression atlas SREBF2 expression
ReMap ChIP-seq dataset list SREBF2 datasets
Motifs in JASPAR
MA0596.1 (SREBF2; Homo sapiens)
PCM
ACGT
01609.707577.904878.334276.055
02405.721707.176964.952264.152
03494.205386.7331331.932129.129
04350.404113.691143.5321734.374
0550.24477.7382128.85985.159
06121.65613.3662201.5235.456
07411.337516.6251149.069264.969
08260.005537.91514.6929.404
09677.944351.21725.8051287.034
1058.592183.522042.55157.336
111637.54346.971526.174131.312
12368.512440.031865.337668.12
13371.105490.7931055.59424.512
PWM
ACGT
010.04-0.0130.404-0.748
02-0.3650.1880.498-0.792
03-0.169-0.4130.82-1.5
04-0.511-1.625-1.3961.084
05-2.421-1.9981.288-1.909
06-1.559-3.6481.322-4.375
07-0.352-0.1250.673-0.789
08-0.808-0.0850.948-2.931
090.146-0.509-3.0530.786
10-2.273-1.1531.247-2.294
111.026-2.486-0.106-1.484
12-0.461-0.2850.390.132
13-0.454-0.1760.588-0.32