We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSRF
(GeneCards)
ModelSRF_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusnhbbCCWWWTWWGGnndbn
Best auROC (human)0.97
Best auROC (mouse)0.981
Peak sets in benchmark (human)46
Peak sets in benchmark (mouse)37
Aligned words500
TF familyResponders to external signals (SRF/RLM1) {5.1.2}
TF subfamilySRF {5.1.2.0.1}
HGNCHGNC:11291
EntrezGeneGeneID:6722
(SSTAR profile)
UniProt IDSRF_HUMAN
UniProt ACP11831
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.915610000000001
0.0005 11.81541
0.0001 15.78786
GTEx tissue expression atlas SRF expression
ReMap ChIP-seq dataset list SRF datasets
Motifs in JASPAR
MA0083.1 (SRF; Homo sapiens)
MA0083.2 (SRF; Homo sapiens)
MA0083.3 (SRF; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0126.020.018.043.031.031.017.083.018.019.015.041.09.019.07.0103.0
0211.016.027.030.05.018.06.060.08.018.010.021.012.043.057.0158.0
035.01.022.08.06.08.025.056.07.035.017.041.023.043.097.0106.0
040.040.01.00.02.081.00.04.02.0152.06.01.03.0194.02.012.0
051.04.00.02.02.0437.01.027.00.09.00.00.01.011.01.04.0
060.00.00.04.0132.026.013.0290.00.01.00.01.013.04.03.013.0
0721.02.011.0111.02.07.05.017.00.01.05.010.033.04.014.0257.0
0840.02.03.011.05.00.00.09.012.04.012.07.0215.010.035.0135.0
095.09.08.0250.00.02.00.014.00.06.02.042.01.06.09.0146.0
103.02.01.00.05.09.02.07.09.05.00.05.0205.039.015.0193.0
1136.08.09.0169.07.019.05.024.00.04.04.010.018.08.017.0162.0
125.00.056.00.04.00.035.00.06.01.028.00.031.05.0323.06.0
130.03.042.01.00.00.05.01.010.09.0406.017.00.02.04.00.0
146.03.01.00.04.06.00.04.083.0119.0146.0109.02.014.01.02.0
1519.035.029.012.041.039.019.043.028.075.025.020.026.049.022.018.0
1645.07.036.026.0120.017.022.039.035.012.020.028.021.018.026.028.0
1741.041.053.086.04.05.019.026.09.034.027.034.011.022.037.051.0
1823.016.016.010.041.021.022.018.025.033.057.021.030.033.088.046.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.181-0.439-0.5430.316-0.008-0.008-0.5990.969-0.543-0.49-0.7210.269-1.215-0.49-1.4541.184
02-1.022-0.658-0.144-0.04-1.77-0.543-1.60.646-1.328-0.543-1.114-0.392-0.9380.3160.5951.611
03-1.77-3.126-0.346-1.328-1.6-1.328-0.220.578-1.4540.112-0.5990.269-0.3020.3161.1241.213
04-4.40.244-3.126-4.4-2.5840.945-4.4-1.975-2.5841.572-1.6-3.126-2.2341.815-2.584-0.938
05-3.126-1.975-4.4-2.584-2.5842.626-3.126-0.144-4.4-1.215-4.4-4.4-3.126-1.022-3.126-1.975
06-4.4-4.4-4.4-1.9751.431-0.181-0.862.217-4.4-3.126-4.4-3.126-0.86-1.975-2.234-0.86
07-0.392-2.584-1.0221.259-2.584-1.454-1.77-0.599-4.4-3.126-1.77-1.1140.054-1.975-0.7882.096
080.244-2.584-2.234-1.022-1.77-4.4-4.4-1.215-0.938-1.975-0.938-1.4541.918-1.1140.1121.454
09-1.77-1.215-1.3282.069-4.4-2.584-4.4-0.788-4.4-1.6-2.5840.293-3.126-1.6-1.2151.532
10-2.234-2.584-3.126-4.4-1.77-1.215-2.584-1.454-1.215-1.77-4.4-1.771.8710.219-0.7211.81
110.14-1.328-1.2151.678-1.454-0.49-1.77-0.26-4.4-1.975-1.975-1.114-0.543-1.328-0.5991.636
12-1.77-4.40.578-4.4-1.975-4.40.112-4.4-1.6-3.126-0.108-4.4-0.008-1.772.324-1.6
13-4.4-2.2340.293-3.126-4.4-4.4-1.77-3.126-1.114-1.2152.553-0.599-4.4-2.584-1.975-4.4
14-1.6-2.234-3.126-4.4-1.975-1.6-4.4-1.9750.9691.3281.5321.241-2.584-0.788-3.126-2.584
15-0.490.112-0.074-0.9380.2690.219-0.490.316-0.1080.868-0.22-0.439-0.1810.445-0.346-0.543
160.361-1.4540.14-0.1811.336-0.599-0.3460.2190.112-0.938-0.439-0.108-0.392-0.543-0.181-0.108
170.2690.2690.5231.004-1.975-1.77-0.49-0.181-1.2150.083-0.1440.083-1.022-0.3460.1670.485
18-0.302-0.658-0.658-1.1140.269-0.392-0.346-0.543-0.220.0540.595-0.392-0.040.0541.0270.383