Transcription factor | SRF (GeneCards) | ||||||||
Model | SRF_HUMAN.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 19 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nhbbCCWWWTWWGGnndbn | ||||||||
Best auROC (human) | 0.97 | ||||||||
Best auROC (mouse) | 0.981 | ||||||||
Peak sets in benchmark (human) | 46 | ||||||||
Peak sets in benchmark (mouse) | 37 | ||||||||
Aligned words | 500 | ||||||||
TF family | Responders to external signals (SRF/RLM1) {5.1.2} | ||||||||
TF subfamily | SRF {5.1.2.0.1} | ||||||||
HGNC | HGNC:11291 | ||||||||
EntrezGene | GeneID:6722 (SSTAR profile) | ||||||||
UniProt ID | SRF_HUMAN | ||||||||
UniProt AC | P11831 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | SRF expression | ||||||||
ReMap ChIP-seq dataset list | SRF datasets | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 26.0 | 20.0 | 18.0 | 43.0 | 31.0 | 31.0 | 17.0 | 83.0 | 18.0 | 19.0 | 15.0 | 41.0 | 9.0 | 19.0 | 7.0 | 103.0 |
02 | 11.0 | 16.0 | 27.0 | 30.0 | 5.0 | 18.0 | 6.0 | 60.0 | 8.0 | 18.0 | 10.0 | 21.0 | 12.0 | 43.0 | 57.0 | 158.0 |
03 | 5.0 | 1.0 | 22.0 | 8.0 | 6.0 | 8.0 | 25.0 | 56.0 | 7.0 | 35.0 | 17.0 | 41.0 | 23.0 | 43.0 | 97.0 | 106.0 |
04 | 0.0 | 40.0 | 1.0 | 0.0 | 2.0 | 81.0 | 0.0 | 4.0 | 2.0 | 152.0 | 6.0 | 1.0 | 3.0 | 194.0 | 2.0 | 12.0 |
05 | 1.0 | 4.0 | 0.0 | 2.0 | 2.0 | 437.0 | 1.0 | 27.0 | 0.0 | 9.0 | 0.0 | 0.0 | 1.0 | 11.0 | 1.0 | 4.0 |
06 | 0.0 | 0.0 | 0.0 | 4.0 | 132.0 | 26.0 | 13.0 | 290.0 | 0.0 | 1.0 | 0.0 | 1.0 | 13.0 | 4.0 | 3.0 | 13.0 |
07 | 21.0 | 2.0 | 11.0 | 111.0 | 2.0 | 7.0 | 5.0 | 17.0 | 0.0 | 1.0 | 5.0 | 10.0 | 33.0 | 4.0 | 14.0 | 257.0 |
08 | 40.0 | 2.0 | 3.0 | 11.0 | 5.0 | 0.0 | 0.0 | 9.0 | 12.0 | 4.0 | 12.0 | 7.0 | 215.0 | 10.0 | 35.0 | 135.0 |
09 | 5.0 | 9.0 | 8.0 | 250.0 | 0.0 | 2.0 | 0.0 | 14.0 | 0.0 | 6.0 | 2.0 | 42.0 | 1.0 | 6.0 | 9.0 | 146.0 |
10 | 3.0 | 2.0 | 1.0 | 0.0 | 5.0 | 9.0 | 2.0 | 7.0 | 9.0 | 5.0 | 0.0 | 5.0 | 205.0 | 39.0 | 15.0 | 193.0 |
11 | 36.0 | 8.0 | 9.0 | 169.0 | 7.0 | 19.0 | 5.0 | 24.0 | 0.0 | 4.0 | 4.0 | 10.0 | 18.0 | 8.0 | 17.0 | 162.0 |
12 | 5.0 | 0.0 | 56.0 | 0.0 | 4.0 | 0.0 | 35.0 | 0.0 | 6.0 | 1.0 | 28.0 | 0.0 | 31.0 | 5.0 | 323.0 | 6.0 |
13 | 0.0 | 3.0 | 42.0 | 1.0 | 0.0 | 0.0 | 5.0 | 1.0 | 10.0 | 9.0 | 406.0 | 17.0 | 0.0 | 2.0 | 4.0 | 0.0 |
14 | 6.0 | 3.0 | 1.0 | 0.0 | 4.0 | 6.0 | 0.0 | 4.0 | 83.0 | 119.0 | 146.0 | 109.0 | 2.0 | 14.0 | 1.0 | 2.0 |
15 | 19.0 | 35.0 | 29.0 | 12.0 | 41.0 | 39.0 | 19.0 | 43.0 | 28.0 | 75.0 | 25.0 | 20.0 | 26.0 | 49.0 | 22.0 | 18.0 |
16 | 45.0 | 7.0 | 36.0 | 26.0 | 120.0 | 17.0 | 22.0 | 39.0 | 35.0 | 12.0 | 20.0 | 28.0 | 21.0 | 18.0 | 26.0 | 28.0 |
17 | 41.0 | 41.0 | 53.0 | 86.0 | 4.0 | 5.0 | 19.0 | 26.0 | 9.0 | 34.0 | 27.0 | 34.0 | 11.0 | 22.0 | 37.0 | 51.0 |
18 | 23.0 | 16.0 | 16.0 | 10.0 | 41.0 | 21.0 | 22.0 | 18.0 | 25.0 | 33.0 | 57.0 | 21.0 | 30.0 | 33.0 | 88.0 | 46.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.181 | -0.439 | -0.543 | 0.316 | -0.008 | -0.008 | -0.599 | 0.969 | -0.543 | -0.49 | -0.721 | 0.269 | -1.215 | -0.49 | -1.454 | 1.184 |
02 | -1.022 | -0.658 | -0.144 | -0.04 | -1.77 | -0.543 | -1.6 | 0.646 | -1.328 | -0.543 | -1.114 | -0.392 | -0.938 | 0.316 | 0.595 | 1.611 |
03 | -1.77 | -3.126 | -0.346 | -1.328 | -1.6 | -1.328 | -0.22 | 0.578 | -1.454 | 0.112 | -0.599 | 0.269 | -0.302 | 0.316 | 1.124 | 1.213 |
04 | -4.4 | 0.244 | -3.126 | -4.4 | -2.584 | 0.945 | -4.4 | -1.975 | -2.584 | 1.572 | -1.6 | -3.126 | -2.234 | 1.815 | -2.584 | -0.938 |
05 | -3.126 | -1.975 | -4.4 | -2.584 | -2.584 | 2.626 | -3.126 | -0.144 | -4.4 | -1.215 | -4.4 | -4.4 | -3.126 | -1.022 | -3.126 | -1.975 |
06 | -4.4 | -4.4 | -4.4 | -1.975 | 1.431 | -0.181 | -0.86 | 2.217 | -4.4 | -3.126 | -4.4 | -3.126 | -0.86 | -1.975 | -2.234 | -0.86 |
07 | -0.392 | -2.584 | -1.022 | 1.259 | -2.584 | -1.454 | -1.77 | -0.599 | -4.4 | -3.126 | -1.77 | -1.114 | 0.054 | -1.975 | -0.788 | 2.096 |
08 | 0.244 | -2.584 | -2.234 | -1.022 | -1.77 | -4.4 | -4.4 | -1.215 | -0.938 | -1.975 | -0.938 | -1.454 | 1.918 | -1.114 | 0.112 | 1.454 |
09 | -1.77 | -1.215 | -1.328 | 2.069 | -4.4 | -2.584 | -4.4 | -0.788 | -4.4 | -1.6 | -2.584 | 0.293 | -3.126 | -1.6 | -1.215 | 1.532 |
10 | -2.234 | -2.584 | -3.126 | -4.4 | -1.77 | -1.215 | -2.584 | -1.454 | -1.215 | -1.77 | -4.4 | -1.77 | 1.871 | 0.219 | -0.721 | 1.81 |
11 | 0.14 | -1.328 | -1.215 | 1.678 | -1.454 | -0.49 | -1.77 | -0.26 | -4.4 | -1.975 | -1.975 | -1.114 | -0.543 | -1.328 | -0.599 | 1.636 |
12 | -1.77 | -4.4 | 0.578 | -4.4 | -1.975 | -4.4 | 0.112 | -4.4 | -1.6 | -3.126 | -0.108 | -4.4 | -0.008 | -1.77 | 2.324 | -1.6 |
13 | -4.4 | -2.234 | 0.293 | -3.126 | -4.4 | -4.4 | -1.77 | -3.126 | -1.114 | -1.215 | 2.553 | -0.599 | -4.4 | -2.584 | -1.975 | -4.4 |
14 | -1.6 | -2.234 | -3.126 | -4.4 | -1.975 | -1.6 | -4.4 | -1.975 | 0.969 | 1.328 | 1.532 | 1.241 | -2.584 | -0.788 | -3.126 | -2.584 |
15 | -0.49 | 0.112 | -0.074 | -0.938 | 0.269 | 0.219 | -0.49 | 0.316 | -0.108 | 0.868 | -0.22 | -0.439 | -0.181 | 0.445 | -0.346 | -0.543 |
16 | 0.361 | -1.454 | 0.14 | -0.181 | 1.336 | -0.599 | -0.346 | 0.219 | 0.112 | -0.938 | -0.439 | -0.108 | -0.392 | -0.543 | -0.181 | -0.108 |
17 | 0.269 | 0.269 | 0.523 | 1.004 | -1.975 | -1.77 | -0.49 | -0.181 | -1.215 | 0.083 | -0.144 | 0.083 | -1.022 | -0.346 | 0.167 | 0.485 |
18 | -0.302 | -0.658 | -0.658 | -1.114 | 0.269 | -0.392 | -0.346 | -0.543 | -0.22 | 0.054 | 0.595 | -0.392 | -0.04 | 0.054 | 1.027 | 0.383 |