Model info
| Transcription factor | SRF (GeneCards) | ||||||||
| Model | SRF_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 18 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hhbCCWWWTWTGGbvddd | ||||||||
| Best auROC (human) | 0.956 | ||||||||
| Best auROC (mouse) | 0.979 | ||||||||
| Peak sets in benchmark (human) | 46 | ||||||||
| Peak sets in benchmark (mouse) | 37 | ||||||||
| Aligned words | 131 | ||||||||
| TF family | Responders to external signals (SRF/RLM1) {5.1.2} | ||||||||
| TF subfamily | SRF {5.1.2.0.1} | ||||||||
| HGNC | HGNC:11291 | ||||||||
| EntrezGene | GeneID:6722 (SSTAR profile) | ||||||||
| UniProt ID | SRF_HUMAN | ||||||||
| UniProt AC | P11831 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | SRF expression | ||||||||
| ReMap ChIP-seq dataset list | SRF datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 17.0 | 27.0 | 12.0 | 75.0 |
| 02 | 16.0 | 25.0 | 14.0 | 76.0 |
| 03 | 19.0 | 20.0 | 52.0 | 40.0 |
| 04 | 4.0 | 121.0 | 2.0 | 4.0 |
| 05 | 0.0 | 123.0 | 1.0 | 7.0 |
| 06 | 42.0 | 10.0 | 4.0 | 75.0 |
| 07 | 17.0 | 7.0 | 4.0 | 103.0 |
| 08 | 79.0 | 3.0 | 6.0 | 43.0 |
| 09 | 0.0 | 1.0 | 1.0 | 129.0 |
| 10 | 69.0 | 6.0 | 0.0 | 56.0 |
| 11 | 25.0 | 3.0 | 1.0 | 102.0 |
| 12 | 7.0 | 3.0 | 121.0 | 0.0 |
| 13 | 5.0 | 1.0 | 125.0 | 0.0 |
| 14 | 14.0 | 28.0 | 45.0 | 44.0 |
| 15 | 21.0 | 77.0 | 20.0 | 13.0 |
| 16 | 64.0 | 10.0 | 12.0 | 45.0 |
| 17 | 22.0 | 20.0 | 28.0 | 61.0 |
| 18 | 41.0 | 15.0 | 42.0 | 33.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.623 | -0.185 | -0.944 | 0.808 |
| 02 | -0.679 | -0.259 | -0.803 | 0.821 |
| 03 | -0.519 | -0.471 | 0.449 | 0.193 |
| 04 | -1.873 | 1.28 | -2.356 | -1.873 |
| 05 | -3.328 | 1.297 | -2.728 | -1.419 |
| 06 | 0.241 | -1.108 | -1.873 | 0.808 |
| 07 | -0.623 | -1.419 | -1.873 | 1.121 |
| 08 | 0.859 | -2.086 | -1.549 | 0.264 |
| 09 | -3.328 | -2.728 | -2.728 | 1.344 |
| 10 | 0.726 | -1.549 | -3.328 | 0.521 |
| 11 | -0.259 | -2.086 | -2.728 | 1.111 |
| 12 | -1.419 | -2.086 | 1.28 | -3.328 |
| 13 | -1.698 | -2.728 | 1.313 | -3.328 |
| 14 | -0.803 | -0.151 | 0.308 | 0.286 |
| 15 | -0.425 | 0.834 | -0.471 | -0.871 |
| 16 | 0.652 | -1.108 | -0.944 | 0.308 |
| 17 | -0.38 | -0.471 | -0.151 | 0.605 |
| 18 | 0.217 | -0.739 | 0.241 | 0.007 |