We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorSrf
ModelSRF_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length21
Quality
A
Motif rank
0
ConsensushhhdYKbCCTTWTWTGGvhdb
Best auROC (human)0.951
Best auROC (mouse)0.988
Peak sets in benchmark (human)46
Peak sets in benchmark (mouse)37
Aligned words322
TF familyResponders to external signals (SRF/RLM1) {5.1.2}
TF subfamilySRF {5.1.2.0.1}
MGIMGI:106658
EntrezGeneGeneID:20807
(SSTAR profile)
UniProt IDSRF_MOUSE
UniProt ACQ9JM73
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.54166
0.0005 10.64771
0.0001 15.110660000000001
GTEx tissue expression atlas Srf expression
Motifs in JASPAR
MA0083.1 (SRF; Homo sapiens)
MA0083.2 (SRF; Homo sapiens)
MA0083.3 (SRF; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0119.020.017.013.013.035.08.017.010.018.010.011.010.071.014.029.0
027.013.012.020.028.022.07.087.011.08.013.017.010.021.08.031.0
0318.014.015.09.029.014.010.011.018.09.08.05.065.015.041.034.0
0419.016.010.085.012.06.03.031.08.018.05.043.03.06.04.046.0
055.05.022.010.05.02.06.033.04.05.01.012.09.09.063.0124.0
062.06.011.04.00.08.01.012.013.047.013.019.012.058.054.055.0
072.024.00.01.01.0116.00.02.01.076.01.01.01.084.01.04.0
080.02.02.01.01.0283.01.015.01.01.00.00.01.06.00.01.0
090.00.00.03.074.02.01.0215.00.01.00.02.07.03.01.06.0
105.03.01.072.00.03.00.03.00.00.00.02.015.08.01.0202.0
1117.02.00.01.01.02.01.010.00.00.02.00.0188.013.04.074.0
1215.02.02.0187.04.02.00.011.00.00.00.07.04.01.06.074.0
1317.01.03.02.00.01.00.04.01.02.04.01.099.021.08.0151.0
1425.01.010.081.05.00.00.020.01.00.00.014.016.00.012.0130.0
154.00.043.00.00.00.01.00.02.00.019.01.025.01.0215.04.0
163.01.026.01.00.00.01.00.01.00.0269.08.01.00.00.04.0
170.04.01.00.01.00.00.00.050.0156.051.039.03.06.00.04.0
1821.015.07.011.052.064.07.043.014.024.03.011.010.017.08.08.0
1935.05.040.017.090.012.03.015.09.05.08.03.025.06.012.030.0
2022.059.023.055.01.010.05.012.011.022.010.020.04.011.024.026.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.0350.015-0.144-0.406-0.4060.567-0.875-0.144-0.66-0.088-0.66-0.568-0.661.27-0.3340.382
02-1.002-0.406-0.4840.0150.3470.109-1.0021.472-0.568-0.875-0.406-0.144-0.660.063-0.8750.447
03-0.088-0.334-0.266-0.7620.382-0.334-0.66-0.568-0.088-0.762-0.875-1.3191.182-0.2660.7240.539
04-0.035-0.203-0.661.449-0.484-1.148-1.7860.447-0.875-0.088-1.3190.771-1.786-1.148-1.5260.838
05-1.319-1.3190.109-0.66-1.319-2.14-1.1480.509-1.526-1.319-2.691-0.484-0.762-0.7621.1511.825
06-2.14-1.148-0.568-1.526-4.021-0.875-2.691-0.484-0.4060.86-0.406-0.035-0.4841.0690.9981.016
07-2.140.195-4.021-2.691-2.6911.759-4.021-2.14-2.6911.337-2.691-2.691-2.6911.437-2.691-1.526
08-4.021-2.14-2.14-2.691-2.6912.649-2.691-0.266-2.691-2.691-4.021-4.021-2.691-1.148-4.021-2.691
09-4.021-4.021-4.021-1.7861.311-2.14-2.6912.374-4.021-2.691-4.021-2.14-1.002-1.786-2.691-1.148
10-1.319-1.786-2.6911.284-4.021-1.786-4.021-1.786-4.021-4.021-4.021-2.14-0.266-0.875-2.6912.312
11-0.144-2.14-4.021-2.691-2.691-2.14-2.691-0.66-4.021-4.021-2.14-4.0212.24-0.406-1.5261.311
12-0.266-2.14-2.142.235-1.526-2.14-4.021-0.568-4.021-4.021-4.021-1.002-1.526-2.691-1.1481.311
13-0.144-2.691-1.786-2.14-4.021-2.691-4.021-1.526-2.691-2.14-1.526-2.6911.6010.063-0.8752.022
140.235-2.691-0.661.401-1.319-4.021-4.0210.015-2.691-4.021-4.021-0.334-0.203-4.021-0.4841.872
15-1.526-4.0210.771-4.021-4.021-4.021-2.691-4.021-2.14-4.021-0.035-2.6910.235-2.6912.374-1.526
16-1.786-2.6910.274-2.691-4.021-4.021-2.691-4.021-2.691-4.0212.598-0.875-2.691-4.021-4.021-1.526
17-4.021-1.526-2.691-4.021-2.691-4.021-4.021-4.0210.9212.0540.9410.675-1.786-1.148-4.021-1.526
180.063-0.266-1.002-0.5680.961.166-1.0020.771-0.3340.195-1.786-0.568-0.66-0.144-0.875-0.875
190.567-1.3190.7-0.1441.506-0.484-1.786-0.266-0.762-1.319-0.875-1.7860.235-1.148-0.4840.415
200.1091.0860.1531.016-2.691-0.66-1.319-0.484-0.5680.109-0.660.015-1.526-0.5680.1950.274